YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RPD1_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLFLRNAFK TLNPKRKLAT TILPSINLIL VKPFSQSTTI PKKQDRVRDH GYDNYMEVEK  60
   61 KIRKVVKFHS LILSQPNHTI AISLLDTLAR RLGLGFKQHE PGAFLLKFPH VFEIYEHPVQ 120
  121 RILYCRLTRK ALDQIRHEHE AVLDQIPDAV TRLRKLVMMS NTGRIRLEHV RIARTEFGLP 180
  181 EDFEYSVILK HPQFFRLIDG EETRDKYIEI VEKDPNLSIC AIERVREIEY RTKGIDAEDV 240
  241 RFSFVVNFPP GFKIGKYFRI AVWKWQRLPY WSPYEDISGY DLRSMEAQNR LEKRSVACIH 300
  301 ELLSLTVEKK ITLERIAHFR NVMNLPKKLK EFLLQHQGIF YISTRGNYGK LHTVFLREGY 360
  361 KRGELVEPND VYLARRRLAE LVLMSPRKAK VDAELVRYRD GLDDEDDVE

Type	Start	End	Confidence
Signal Peptide	1	37	0.68
N-region	1	28
H-region	29	34
C-region	35	37
Cleavage Site	37	38
Non-Cytoplasmic	38	409	0.99