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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|28972662
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QGCKGHSQWI LVTVLMKGFK LSCTASNSNR STPACSPILR KRSRSPTPQN QDGDTMVEKG  60
   61 SDHSSDKSPS TPEQGVQRSC SSQSGRSGGK NSKKSQSWYN VLSPTYKQRN EDFRKLFKQL 120
  121 PDTERLIVDY SCALQRDILL QGRLYLSENW ICFYSNIFRW ETLLTVRLKD ICSMTKEKTA 180
  181 RLIPNAIQVC TDSEKHFFTS FGARDRTYMM MFRLWQNALL EKPLCPKELW HFVHQCYGNE 240
  241 LGLTSDDEDY VPPDDDFNTM GYCEEIPIEE NEVNDSSSKS SIETKPDASP QLPKKSITNS 300
  301 TLTSTGSSEA PVSFDGLPLE EEVMEGDGSL EKELAIDNII GEKIEIMAPV TSPSLDFNDN 360
  361 EDIPTELSDS SDTHDEGEVQ AFYEDLSGRQ YVNEVFNFSV DKLYDLLFTN SPFLRDFMEQ 420
  421 RRFSDIIFHP WKKEENGNQS RVILYTITLT NPLAPKTATV RETQTMYKAS QESECYVIDA 480
  481 EVLTHDVPYH DYFYTINRYT LTRVARNKSR LRVSTELRYR KQPWGFVKTF IEKNFWSGLE 540
  541 DYFRHLETEL TKTESTYLAE IHRQSPKEKA SKSSAVRRRK RPHAHLRVPH LEEVMSPVTT 600
  601 PTDEDVGHRI KHVAGSTQTR HIPEDTPDGF HLQSVSKLLL VISCVICFSL VLLVVLNMML 660
  661 FYKLWMLEYT TQTLTAWQGL RLQERLPQSQ TEWAQLLESQ QKYHDTELQK WREIIKSSVL 720
  721 LLDQMKDSLI NLQNGIRSRD YTAESDEKRN RYH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle