YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PHO17_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	348	0.98
Transmembrane Helix	349	373	0.90
Non-Cytoplasmic	374	391	0.91
Transmembrane Helix	392	413	0.94
Cytoplasmic	414	432	0.97
Transmembrane Helix	433	455	0.93
Non-Cytoplasmic	456	472	0.91
Transmembrane Helix	473	493	0.93
Cytoplasmic	494	498	0.82
Transmembrane Helix	499	518	0.49
Non-Cytoplasmic	519	560	0.52
Transmembrane Helix	561	579	0.55
Cytoplasmic	580	595	0.70
Transmembrane Helix	596	614	0.60
Non-Cytoplasmic	615	622	0.65
Transmembrane Helix	623	643	0.87
Cytoplasmic	644	663	0.67
Transmembrane Helix	664	683	0.86
Non-Cytoplasmic	684	692	0.69
Transmembrane Helix	693	714	0.60
Cytoplasmic	715	750	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFGKDFVRQ MIPEWQQAYM DYAGLKSILQ EIQTSRKRSE RPGILKRKLS GSRNFSGLTK  60
   61 RYSRTASTRE PEIQDILVHA TTGDDGFERY ETTILEVAEA GRESELAFFK TLDLEFDKVN 120
  121 HFYRSKVEEM VKEAVVLNKQ MDALIAFRIK VERPSSSWSC SETVSVDMNA LDSNDQRNTL 180
  181 AEEMGIRVEG NGSNGGDSTK ESVPQVLSVL ERIRLNKTQE TPLSTIKNVL KLSNQEELKF 240
  241 TRENLKKIEE RLKNVFIEFY RKLRHLKNYS FLNTLAISKI MKKYDKIASR SAAKPYMEMV 300
  301 DKSYLTSSDE INKLMLRVES TFVEHFAGLN RSKGMNLLRP KVKKEKHRIT FSTGFFVGCT 360
  361 VSLVVALVMF IHARNIMGAV GHKVYMETMF PLYSLFAFVV LHMIMYASNI YFWKRYRVNY 420
  421 PFIFGFKEGT ELGYRHVLLL SFGLGTLALC AVLINLDMEM DPNTNDYKTM TELLPMFILA 480
  481 LVVAILFCPF NIFYRSSRVF FLMVVFRCIA APLYKVNLPD FFLADQLTSQ VQALRSLEFY 540
  541 ICYYGWGDFK HRQNTCRSSD VYSTFYFIVA VIPYWSRFLQ CVRRLIEEND SSQGYNALKY 600
  601 LLTVVAVCLR TAYSFNRGNI WKISAWVFSA LATFYGTYWD IVFDWGLLHR PSKHLLREKL 660
  661 LVPHKAVYYV AIVLNIVLRM AWLQTVLDFN LSFLHRETMI ALLAALEIIR RGIWNFFRLE 720
  721 NEHLNNVGKF RAFKSVPLPF NYNEEEDRDS