YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PHO14_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	339	0.97
Transmembrane Helix	340	363	0.93
Non-Cytoplasmic	364	383	0.89
Transmembrane Helix	384	405	0.94
Cytoplasmic	406	424	0.95
Transmembrane Helix	425	447	0.93
Non-Cytoplasmic	448	464	0.87
Transmembrane Helix	465	485	0.93
Cytoplasmic	486	490	0.85
Transmembrane Helix	491	510	0.87
Non-Cytoplasmic	511	552	0.84
Transmembrane Helix	553	572	0.86
Cytoplasmic	573	588	0.78
Transmembrane Helix	589	607	0.70
Non-Cytoplasmic	608	615	0.66
Transmembrane Helix	616	636	0.86
Cytoplasmic	637	659	0.64
Transmembrane Helix	660	677	0.85
Non-Cytoplasmic	678	686	0.60
Transmembrane Helix	687	708	0.44
Cytoplasmic	709	745	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFGKEFVSQ MIPEWQEAYI DYAYLKTILQ DIQASRNRSD SNNQSSTPSF ARNLTRRYNR  60
   61 DALVSENHDI VVNTVTRLEE GLETAAYETT FLKAGEAGGD FEVTFFRTLD REFNKVNNFY 120
  121 RLKVETARTE ALALNKQMDA LIAFRHKVMD QNQKNPSVFD SVSEDINGSA SEVGSSSKCT 180
  181 EHNVALADLM RNEDTSNESI LERIRMNKTR EITPLSAIKT ILKVHKQDEL KFTRDNLKEV 240
  241 EKRLQVAFIE FYQKLRHLKN YSFLNASAVS KIMKKYDKIA KRNAAKLYME MVDKSFLSSS 300
  301 EEVHKLLLKV ESIFIEHFSN SNRREGMSHL RPKINKERHL ITFSTGFFFG CGISLIVALG 360
  361 LIIHARNIMG TPGQRTYMET MFPLYRFFGF VVLHMDVYAA NIYFWRRYRV NYSFIFGFKQ 420
  421 GTELGYRHVL LLSFGLGTLS LCAVLLNLDM EMDAQTKDYR LVTELIPLFL LVLVIIIVLC 480
  481 PFNILYRSSR FFFLSVLFRC IAAPFYAVHL PDFFLGDQLT SQVQALRSLE FYICYYGFGD 540
  541 FRYRRRNTCT SNIGFRTFYF IVAVIPYWLR FLQCIRRMVE DRDLSHGYNG IKYLLTIVAA 600
  601 SLRTAYTLNR GSNWNITAWV FSGVATFYGT YWDIVLDWGL LQRGCKNSFL RDKLLVPHKT 660
  661 VYYAAMVLNV LLRLVWLQTV LDLKFSFLHR ETMVALMACL EIIRRGIWNF FRLENEHLNN 720
  721 VGRYRAFKTV PLPFNYEEDG DHHNN