YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17945723
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.89
Transmembrane Helix	11	30	0.92
Non-Cytoplasmic	31	56	0.89
Transmembrane Helix	57	76	0.97
Cytoplasmic	77	83	0.90
Transmembrane Helix	84	103	0.95
Non-Cytoplasmic	104	109	0.81
Transmembrane Helix	110	132	0.91
Cytoplasmic	133	140	0.88
Transmembrane Helix	141	162	0.94
Non-Cytoplasmic	163	169	0.72
Transmembrane Helix	170	188	0.97
Cytoplasmic	189	266	0.98
Transmembrane Helix	267	291	0.88
Non-Cytoplasmic	292	301	0.79
Transmembrane Helix	302	322	0.91
Cytoplasmic	323	330	0.84
Transmembrane Helix	331	353	0.90
Non-Cytoplasmic	354	367	0.85
Transmembrane Helix	368	390	0.91
Cytoplasmic	391	400	0.88
Transmembrane Helix	401	421	0.93
Non-Cytoplasmic	422	430	0.74
Transmembrane Helix	431	452	0.93
Cytoplasmic	453	467	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTGGDKYQ YLAAISVNII SISYGAFCGW PSSSFLELSS ENSPLDTGPL TPTDQGWVAS  60
   61 NICLGGLVGT FLFTWLADRI GRKLCLMWMA LPNLLGWVII PFARTPMHLI IARFIDGAAG 120
  121 GGCFTVIPIY IAELASDNIR GILGVFLVLT CNFGLVLAFV LGYYFNYAQV SWIVSSLSFV 180
  181 FVGCFWFMPE TPQHLAKINK IEEAEHSLRY YRNIKSNPAK ELSEELQLEL QKLKTTEKTT 240
  241 ADGVDDDDAA TGVTWSDFAE GKTRKAFLIG LGLISFNQLC GCFAMLNYTA VIFEQAGSSL 300
  301 PPTVAAIIVG VIQLMGTYAS TVLVERLGRK ILLLVSAVGI GLGQSAMGTY SYFQMLGCPV 360
  361 ASFSWVPIAG FSFMLFLAAV GLLSLPFLVV SEIMPQKIRS TAIMILMSTL WLISTCAVKL 420
  421 MPVFTESLGM HGTVFMFASL SFLAAIFIAI FVPETKGKSV DAILASL