YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17945527
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYTAGGQIMA DITGGKYRTC VSTLFEQFWS IGVMMLPGVA SFWSSWSHLY MAISWPTVIL  60
   61 IYLWQWIPDS PRWLIARGRT QDAKKILLEC VEVNGTGYNL PHDIDQQLEL QAQTAMDAPP 120
  121 PSGWWSMWKG ERAVRHIVCV HLAWSLYIVV YYGMLLNIRS FSRDHLYINT FFAGFSEMMG 180
  181 TFFGLFLILK TTRKWLWTGL FNIVAGCIAY CGWLVPKPSV IGLDPNVALL MCSAMVSKMA 240
  241 ISTTLSILTT CTVELVSDDK KKITSFSTIC WARFWLLGAP FIGSTVVFGQ LIPQTAFASL 300
  301 AILGGLCTSL ISSPRTHPIS RPSSPAAQGT QNITSQFTII DGMDNKGYSP TSKTIHSNST 360
  361 ILKLNTPQSN LPPQLMPGIW TTKITEDGPP M

Type	Start	End	Confidence
Cytoplasmic	1	19	0.88
Transmembrane Helix	20	40	0.83
Non-Cytoplasmic	41	47	0.68
Transmembrane Helix	48	67	0.92
Cytoplasmic	68	133	0.98
Transmembrane Helix	134	155	0.90
Non-Cytoplasmic	156	165	0.88
Transmembrane Helix	166	189	0.89
Cytoplasmic	190	194	0.95
Transmembrane Helix	195	216	0.90
Non-Cytoplasmic	217	226	0.87
Transmembrane Helix	227	253	0.77
Cytoplasmic	254	268	0.83
Transmembrane Helix	269	288	0.90
Non-Cytoplasmic	289	294	0.63
Transmembrane Helix	295	314	0.88
Cytoplasmic	315	391	0.95