YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17944997
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQNRSTWIG CSLGGLLVAL LALQTMPQGT EGANILGVFT SHSPSHFIVH MSIMKTLAEK  60
   61 GHNVTVVSSV PPKVTHKSIN HIVVPMSAED EKVLNDGMAG MVKEKPSIWN TMKSIFSSLA 120
  121 LLIDKQVDVL EDPRFQELYL NKGNKFDVVF VGFFFNTYQV ALGARFNCPV IISWSGPPMM 180
  181 MVNEVLGNPE LSSVPQMHIS APPGQPMNFQ QRMQNFASTL GFNALNIFLN HKYNKFYDGL 240
  241 WSKDKSMPTF AQAKRNVSLA FCNGHGISEG PIRPNVPGVI EIGGIQVKSK PDPLPEDIQE 300
  301 FLEKGKHGAI LFSLGSNLKG EHIQPEVVKT IFKGLSSLKQ QVIWKWEDPK NTPGKSANIL 360
  361 YKKWLPQDDI LAHPKLKLFI THAGKGGVAE AQYHGVPMLA LPVFADQPGN ADKLVASGYG 420
  421 LQLPLATLDV DEFKAAIKEV IENPKYAKTL KSFSQLYRDR PLSPQESVVY WTEYVIRHHG 480
  481 AAHMQSPLVH MNFIASNNLD IYIIAALVLY IVFIINKIVW KFVWRKLFGK SNKVSKGKKV 540
  541 KKQ

Type	Start	End	Confidence
Signal Peptide	1	32	0.95
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	500	0.99
Transmembrane Helix	501	520	0.94
Cytoplasmic	521	543	0.92