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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|17944883
Protein type: Transmembrane
Type Confidence: 0.82
Topology Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLKVAVRV RPFNSREIDM DAQLIMEMEN KKTRLLKPRL QSIRDAGRDN HHDFTFDYSY  60
   61 WSFDAEDPHF ATQEQVYSDL GNDVVDCAYE GYNACVFAYG QTGSGKTFTM MGTPNNPGLI 120
  121 PRICEELFAR MRVGQESGTG YRTHASYLEI YNERVKDLLA AQSTGHGLRV REHRSLGPYV 180
  181 ENLSQHAVSD FDEIQECIAR GNAQRTTAST NMNDTSSRSH AIFTITFVQA VFMNDMPSET 240
  241 VSKIHLVDLA GSERANATGA TGQRLKEGAH INKSLVTLGS VISALAEQTG GGHNSSSSAL 300
  301 ATTPNGASKR VLYIPYRDSI LTWLLKDSLG GNSKTIMIAA LSPADCNYSE TLSTLRYANR 360
  361 AKNIINKPTV NEDTNVKLIR ELREEINKLK SMLAGDIHSL QPSLKVLADL QKKEAQEKVL 420
  421 TEEWTEKWKV AQSILQEQKS LGLRKSGVGV VLDSEMPHLI GIHNDVTTGV TLYSLKEGET 480
  481 RIGSEDADVA QDIELAGDGI RAQHCSIFLK GGVVTLHPWP LAQCWVNAHL IDEPKQISQG 540
  541 DIILLGRTNI FRFNNPAEAA KLRKDLSRSQ LDMSRLSLIT SSKENLLTCS IYSDEDGASP 600
  601 YKRPERQYYP QRPMSRDDPE LQDENRKILD TIENALKQLN VERVQMHDQY KTKVRKLTEE 660
  661 LIRLEQEEMD GLQLLNCREQ ELIARKDMLL WEKNNEKVQI DIVCRQISAF QTQLDSKKRD 720
  721 FSEYVAKELQ ELQDCGKLDE MGMKIEEGTP LNDELLLQVS DSLDLFAAQF IKDTVRRNNE 780
  781 EIRKLDEQIA EKERILNAST TKIAKVDETM LEIQAQLERL RLERAESEAE SQAMRAKKQN 840
  841 MKLQLGNKSM STSTSTNEAD DVSKSDTYET CDTFHTAQSN LSLVSSPTIT EGQQSPLSNC 900
  901 SCDAEDEAED TRKDDLSGSS EETSRTCTAG PSSGSGSGSV GIGGSGSAPS CTPSSQAIMS 960
  961 DSGVCLDSRN QAILQNGHLN NYKQAVRTSD EDTGSCSSCE LGRHSDVARP YCPLHSLRRK1020
 1021 IAAQKALIMK NLETDLNKAQ LDEHIADLQD LQRRYIQMEQ EMLQSVQDLE AHAQCCADER1080
 1081 SGMERQYELA SSIMRSSVMS PTSMEESTSQ IYSPSMTRSC PSMREFPEGE HFITIPSFVM1140
 1141 RGAGKQTHYE YEVRIALPDG KLNILRRYSR FRELHLCMKH CYGAKISALP FPRRELFASN1200
 1201 SEPVAKHRRR LLELYLRRLF VVCSKIPQCP IYEGPGGTGL TRASLVQLSS FFQEGPVRER1260
 1261 QTRDGIIVNL LLNYLLPTVC LFIYLYYLLS YMNDNMDLF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle