YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17944291
Protein type:	Globular with Signal Peptide
Type Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWKILCGIVV LVTIVVNQLS EAREVRRRRG LMLQLDNYLS YDGIMQYLDE LALSHSNRVT  60
   61 LKDVARTYEN RALKMAIITN GDGRPGKRVI FLDAALHSRE WMTPAAALLT IHKLVVEFAE 120
  121 NSDLLTDYDW HIMPLANPDG YEYSRNTERY WRNTRTPNGG NCFGTNLNRN FAVDWNVGFP 180
  181 ELKDPCDENY AGSSPFSEVE ARTVRDIMHG LVESKRAVMY LSLHTANRSV FYPWVYDTDP 240
  241 VSNQKEHDEI GRFVADRILQ STGTFIKTWQ YAKYAGTFGG TSMDYALLAG FPLSFVFEMS 300
  301 VTGRDHVEYK FFPPARDIRH LAEESWTGIK AFAEKTIEKY PPSRVISYNP MVKLAENAAT 360
  361 RNLGFNSMVA TVCLFFTYLT NCNFF

Type	Start	End	Confidence
Signal Peptide	1	22	0.96
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	385	0.97