YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17862784
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.75
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	18	0.75
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	101	0.70
Transmembrane Helix	102	122	0.90
Cytoplasmic	123	131	0.51
Transmembrane Helix	132	151	0.89
Non-Cytoplasmic	152	160	0.60
Transmembrane Helix	161	183	0.76
Cytoplasmic	184	191	0.51
Transmembrane Helix	192	217	0.87
Non-Cytoplasmic	218	231	0.49
Transmembrane Helix	232	253	0.86
Cytoplasmic	254	261	0.44
Transmembrane Helix	262	282	0.51
Non-Cytoplasmic	283	303	0.59
Transmembrane Helix	304	326	0.91
Cytoplasmic	327	333	0.61
Transmembrane Helix	334	353	0.64
Non-Cytoplasmic	354	355	0.62
Transmembrane Helix	356	377	0.85
Cytoplasmic	378	392	0.84
Transmembrane Helix	393	413	0.93
Non-Cytoplasmic	414	420	0.85
Transmembrane Helix	421	444	0.91
Cytoplasmic	445	457	0.90
Transmembrane Helix	458	477	0.93
Non-Cytoplasmic	478	487	0.83
Transmembrane Helix	488	511	0.91
Cytoplasmic	512	649	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVWVAYSAA ALLLLVHAGP ESISGQEVPQ SKTSSNTTTT DNSSSIHTVS DVFVNSPLGN  60
   61 VTPSISASGN ASTTKRGNAS TLVTDPPLID SHAVEQEHNS SLSLFFVICV IMLGILLIHS 120
  121 MLQTGFQYLP ESIVVVFLGA FIGLSLNVMS GQNGSWKREE VFSPMGFFLV LLPPIIFESG 180
  181 YNLHKGNFFQ NIGSILVFAI FGTTISALVI GAGIYLLGLG EVAFRLSFSE SFAFGSLISA 240
  241 VDPVATVAIF HALDVDPILN MLVFGESILN DAISIVLTAS ITQSANVNAE ASTGEAMFSA 300
  301 LKTFCAMFFA SAGIGVIFAL ISALLLKHID LRKHPSLEFA MMLMFTYAPY VLAEGIHLSG 360
  361 IMAILFCGIV MSHYTHFNLS TVTQITMQQT MRTLAFIAET CVFAYLGLAI FSFKHQVELS 420
  421 FVIWAIVLCL IGRACNIFPL AFLVNKFREH KINNKMQFIM WFSGLRGAIS YALSLHLNLD 480
  481 SQEKRHVIIT TTLIIVLFTT LVLGGSTMPV LKYLKPGKKR RARGSGRNAA EEGGRRNGSG 540
  541 RKRSKSISLS KTREWGQAID SEHLSELTEE EDVTFTQARD RFGRMDRKYF IPFFTRRFNS 600
  601 QELHECNSQM ADLTNKWYQA IRVSPLDSDE SDEEIGLAAS TSQIHLTRS