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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|17864880, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.74
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAGCLLALT LTLFQSWLIG PSSEEPFPSP VTIKSWVDKM QEDLVTLAKT ASGVTQLADI  60
   61 YEKYQDLYTV EPNNARQLVE IAARDIEKLL SNRSKALVRL AMEAEKVQAA HQWREDFASN 120
  121 EVVYYNAKDD LDPERNESES GSQRIKPVFI EDANFGRQIS YQHAAVHIPT DIYEGSTIVL 180
  181 NELNWTSALD EVFKRNRDED PTLLWQVFGS ATGLARYYPA SPWVDNSRTP NKIDLYDVRR 240
  241 RPWYIQGAAS PKDMLILVDV SGSVSGLTLK LIRTSVSEML ETLSDDDFVN VASFNSNAQD 300
  301 VSCFQHLVQA NVRNKKVLKD AVNNITAKGI TDYKKGFSFA FEQLLNYNVS RANCNKIIML 360
  361 FTDGGEERAQ EIFAKYNKDK KVRVFTFSVG QHNYDRGPIQ WMACENKGYY YEIPSIGAIR 420
  421 INTQEYLDVL GRPMVLAGDK AKQVQWTNVY LDALELGLVI TGTLPVFNVT GQSENKTNLK 480
  481 NQLILGVMGV DVSLEDIKRL TPRFTLCPNG YYFAIDPNGY VLLHPNLQPK EPVTLDFLDA 540
  541 ELENDIKVEI RNKMIDGESG EKTFRTLVKS QDERYIDKGN RTYTWTPVNG TDYSLALVLP 600
  601 TYSFYYIKAK IEETITQARY SETLKPDNFE ESGYTFIAPR EYCNDLKPSD NNTEFLLNFN 660
  661 EFIDRKTPNN PSCNTDLINR ILLDAGFTNE LVQNYWSKQK NIKGVKARFV VTDGGITRVY 720
  721 PKEAGENWQE NPETYEDSFY KRSLDNDNYV FTAPYFNKSG PGAYESGIMV SKAVELYIQG 780
  781 KLLKPAVVGI KIDVNSWIEN FTKTSIRDPC AGPVCDCKRN SDVMDCVILD DGGFLLMANH 840
  841 DDYTNQIGRF FGEIDPSMMR HLVNISLYAF NKSYDYQSVC DPGAAPKQGA GHRSAYVPSI 900
  901 TDILQIGWWA TAAAWSILQQ LLLSLTFPRL LEAVEMEEDD FTASLSKQSC ITEQTQYFFK 960
  961 NDTKSFSGLL DCGNCSRIFH VEKLMNTNLV FIMVESKGTC PCDTRLLMQA EQTSDGPDPC1020
 1021 DMVKQPRYRK GPDVCFDNNV LEDYTDCGGV SGLNPSLWSI FGLQFILLWL VSGSRHYLW

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle