YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	IRT3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFVDVLWKL VPLYLFGSET KSLSATESIL QIVPEAMAAT SSNVLCNASE SDLCRDDSAA  60
   61 FLLKFVAIAS ILLAGAAGVT IPLIGRNRRF LQTDGNLFVT AKAFAAGVIL ATGFVHMLAG 120
  121 GTEALKNPCL PDFPWSKFPF PGFFAMIAAL ITLFVDFMGT QYYERKQERE ASESVEPFGR 180
  181 EQSPGIVVPM IGEGTNDGKV FGEEDSGGIH IVGIHAHAAH HRHSHPPGHD SCEGHSKIDI 240
  241 GHAHAHGHGH GHGHGHVHGG LDAVNGARHI VVSQVLELGI VSHSIIIGLS LGVSQSPCTI 300
  301 RPLIAALSFH QFFEGFALGG CISQAQFRNK SATIMACFFA LTTPIGIGIG TAVASSFNSH 360
  361 SVGALVTEGI LDSLSAGILV YMALVDLIAA DFLSTKMRCN FRLQIVSYVM LFLGAGLMSS 420
  421 LAIWA

Type	Start	End	Confidence
Non-Cytoplasmic	1	64	0.85
Transmembrane Helix	65	85	0.91
Cytoplasmic	86	97	0.87
Transmembrane Helix	98	119	0.91
Non-Cytoplasmic	120	139	0.88
Transmembrane Helix	140	160	0.92
Cytoplasmic	161	274	0.95
Transmembrane Helix	275	293	0.66
Non-Cytoplasmic	294	302	0.53
Transmembrane Helix	303	322	0.67
Cytoplasmic	323	333	0.78
Transmembrane Helix	334	354	0.94
Non-Cytoplasmic	355	369	0.79
Transmembrane Helix	370	393	0.80
Cytoplasmic	394	403	0.82
Transmembrane Helix	404	424	0.93
Non-Cytoplasmic	425	425	0.99