YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17136073
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.99
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	104	0.98
Transmembrane Helix	105	124	0.90
Cytoplasmic	125	135	0.71
Transmembrane Helix	136	154	0.93
Non-Cytoplasmic	155	164	0.66
Transmembrane Helix	165	183	0.69
Cytoplasmic	184	190	0.57
Transmembrane Helix	191	215	0.87
Non-Cytoplasmic	216	229	0.66
Transmembrane Helix	230	252	0.86
Cytoplasmic	253	259	0.66
Transmembrane Helix	260	282	0.77
Non-Cytoplasmic	283	301	0.60
Transmembrane Helix	302	324	0.90
Cytoplasmic	325	332	0.53
Transmembrane Helix	333	351	0.66
Non-Cytoplasmic	352	354	0.67
Transmembrane Helix	355	375	0.85
Cytoplasmic	376	388	0.94
Transmembrane Helix	389	411	0.85
Non-Cytoplasmic	412	419	0.77
Transmembrane Helix	420	443	0.89
Cytoplasmic	444	457	0.89
Transmembrane Helix	458	477	0.91
Non-Cytoplasmic	478	487	0.83
Transmembrane Helix	488	511	0.82
Cytoplasmic	512	582	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSKRTLLIC ALALILGSAQ ARPNTSAVGV APRKVSQDIV DAVTQLNLGQ SAPIDAVDVG  60
   61 LDPTPSARVP RPEPLKSGDE NAKGDEGHKM ERYPLSSVDF ARVKTPFIIG IWILSASIAK 120
  121 IGFHMTPKLH LIFPESCLLI VVGVVIGVVL YFCTDVAVSP LTPNTFFFYM LPPIILDAGY 180
  181 FMPNRLFFDN LGTILLMAVV GTIFNIATIG GSLYACGKMG IYGESETPGL MDVFLFASLI 240
  241 SAVDPVAVLA VFEEIHVNEI LYIVVFGESL LNDAVTVVMY HMMESYNEIG LDKIIAQDIA 300
  301 SGVGSFFVVA LGGTAIGIIW GFLTGLVTRF TDHVRVIEPI FIFVMAYLAY LNAEIFHMSG 360
  361 ILAITFCGIT MKNYVESNIS QKSHTTVKYA LKMLSSSAET IIFMFLGVAT VNNMHVWNTW 420
  421 FVVLTIAFCS VFRVIGVILL SALANRFRLH KLSRVDQFVM SYGGLRGAVA FALVLLVDEN 480
  481 VVKQKNMFVT TTIAVIYFTV FLQGITIKPL VKILNVKRAN KRKPTMNERI HERFMDHLMA 540
  541 GIEDIVGKTG NYNVRDKFKR FDNRFIRPLL IRDLKVFLHL SL