YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6470267
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	18	0.94
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	37	0.89
Transmembrane Helix	38	57	0.94
Cytoplasmic	58	63	0.84
Transmembrane Helix	64	86	0.84
Non-Cytoplasmic	87	159	0.90
Transmembrane Helix	160	177	0.82
Cytoplasmic	178	185	0.80
Transmembrane Helix	186	209	0.89
Non-Cytoplasmic	210	227	0.79
Transmembrane Helix	228	247	0.82
Cytoplasmic	248	255	0.73
Transmembrane Helix	256	278	0.73
Non-Cytoplasmic	279	302	0.85
Transmembrane Helix	303	324	0.93
Cytoplasmic	325	332	0.78
Transmembrane Helix	333	352	0.78
Non-Cytoplasmic	353	356	0.68
Transmembrane Helix	357	376	0.80
Cytoplasmic	377	391	0.81
Transmembrane Helix	392	412	0.84
Non-Cytoplasmic	413	418	0.79
Transmembrane Helix	419	440	0.89
Cytoplasmic	441	455	0.83
Transmembrane Helix	456	475	0.90
Non-Cytoplasmic	476	485	0.76
Transmembrane Helix	486	509	0.82
Cytoplasmic	510	687	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLIVGFALC VLAPGCSATD TDIALDAKAT LNHRIQSLDL LVFVFLLALT VLTIWLFKHH  60
   61 RVSWLHETGL AVIYGLIVGA IIRYAGTSGT LDHMQVEPQG VPTYSDKLPP DTLWFRYPVN 120
  121 QTNGTKPPEG IKTYAYVFRG QVHDVDENEI DLKATFDPEV FFNIILPPII FYAGYCLKKK 180
  181 YFFRNLGAIL TFAIVGTTLS AFLIGGFMYG CVKLMPKYLS SSFTFLDSLY FGALISPTDP 240
  241 LTILAIFNDL RVDVNLYALV LGESVLNDAV AIVLSGAIQN YGEHYSNTGE FETTAFLRSL 300
  301 SDFFSIFLLS LMIGAAMGCL TALMTKFTRV RDFPLLESAL FVLMSYSTFL LAEATELTGV 360
  361 VAVLFCGICQ AHYTYNNLSE DSRQRTKQIF ELLNFLAENF IFSYIGVSMF TFPKHHFDAG 420
  421 FIITAFICAA IGRAVNVYPL SWLLNIKRKP KISTNFQHML FFAGLRGAMS FALAIRNTVS 480
  481 DERQTMLTAT SLIVIFTVVI QGGAANFLLN WLKIPVGVDD ETEQLNNYQV HSSDGYLQDV 540
  541 EGGGVNRNKM RLSGGTDTNL DTPVDGTNGS LGGASGGRRR NSHEKAILAR IWGNFDTKYM 600
  601 KPLLTHSRPT LLETLPVCCN PIARLLTTTQ QLTQDGSEFR RVDSDSDICI DNDTGNGLSQ 660
  661 DGSGAAPGVG RRNSLSRVGG DHRNAYI