YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	QSOX1_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLIHLFLLL GLLSLEAAAS FSPGSRSILR DIGSNVADQK DNAIELNATN FDSVFQDSPA  60
   61 KYAVLEFFAH WCPACRNYKP HYEKVARLFN GADAVYPGVV LMTRVDCAIK MNVKLCDKFS 120
  121 INHYPMLFWA PPKRFVGGSW GPKQEKNEIS VVNEWRTADL LLNWINKQIG SSYGLDDQKL 180
  181 GNLLSNISDQ EQISQAIFDI EEATEEAFDI ILAHKAIKSS ETSASFIRFL QLLVAHHPSR 240
  241 RCRTGSAEIL VNFDDICPSG ECSYDQESGA KDSLRNFHIC GKDVPRGYYR FCRGSKNETR 300
  301 GFSCGLWVLM HSLSVRIEDG ESQFAFTAIC DFINNFFMCD DCRRHFHDMC LSVKTPFKKA 360
  361 RDIALWLWST HNKVNERLKK DEDSLGTGDP KFPKMIWPPK QLCPSCYLSS TEKNIDWDHD 420
  421 QVYKFLKKYY GQKLVSVYKK NGESVSKEEV IAAAEEMAVP TNALVVPVGA ALAIALASCA 480
  481 FGALACYWRT QQKNRKYNYN PHYLKRYNSN YMVMNTFSNT ESEREKER

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	465	0.99
Transmembrane Helix	466	488	0.86
Cytoplasmic	489	528	0.93