YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|16902034
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.94
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEIRLVVVL LVLMTTCIYT LQASDSNSSV ATTLGVLFER APESAVAPKG DEVVFECELN  60
   61 LKPDRLEWRF RRGDSSEPYL YLRPSAGYNV TSGSDGLAWR LRIYVSAQTA GDYQCVAWYG 120
  121 PGALASTPAR LALVSIALDV GQGSMGARSS ICWSVAPKNC LLIRCGSVIS NPPAIWSFYR 180
  181 NGKKLPQSEL LPGAAGALVL DTVTAKDAGN YSCVATNSIT GDELRLPQTI ELRVDYTDRT 240
  241 PPYFLQRPPI EYSARPGETV VLECPGVGSP RPRVIWSSPN VVEIYNNRST ILSYGLQITD 300
  301 VKPEDQGSYI CMLDNGIAPP IDHTIKLSVL QRPTILRGPA ATLTNESNPL LLDCSASGNP 360
  361 QPDIYWLING EDATKDPEAV VDNRSLQLKR VQKRHAGVVQ CFAKNILGET SEGNILRVNP 420
  421 LEITGEDDEP LGEVPVWPVH ESNTGMGTSS TSGGSKNKSG RRKFKASMVP PSRPNVTRLS 480
  481 DESVMLRWSV PQNSGLQITF FKVQYRMLGD GKNRRKNWQT TSDNIPYGNA HGSGPGQGNS 540
  541 HWRARNRDRE YEMGNPPKNF TSSVTGLTAG KYYRFRIVAV YSNNDNKEGN TSLKFFLQNG 600
  601 TSKSNLPVPE LREVETLSES AVVLHWSLVS STQNEDIDGY YAYYRPADSA AEYLKATVDG 660
  661 GMSRSFKIDL LRPGTPYEFK LQSFNSDAAS EFSAIRQART RKTHEQPASS SATPVPANKA 720
  721 VEQHQNSLYP LIAGAAGGGI LLLIASLVVC LCLKRRENSQ PEDENKPQLE HIQADFVTSA 780
  781 VLGVGGHHKS GDVRRLNGVI PRMNITPNPL AQETASDKNN SGLHQNGLHH AQPYHPPGTP 840
  841 TLMHKRLDYH QQPPPVPPHS AYYQQAPTHQ PSPMMERSVR GHQQPGGFHM EEGTPTPTRI 900
  901 PSLRRQRRTS GNQQVHNSHS NLNIGLSHHN NNNNNLPPHH QHLHHHPGHP GGLVGIPIVP 960
  961 GSPRVQRSPM PSRAMIKRTR LGSHTDNISS GSLNSIEV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle