YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16768444
Protein type:	Transmembrane
Type Confidence:	0.56
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRVLFLHPD LGIGGAERLV VDAALALKER GHQVSFLTNH HDSTHCFKET ADGTFPVHVV  60
   61 GDWLPRGLFG RFYAICAYLR MLYAAIYASF FMPQREQVDV VVCDLISVCI PVLRFAPHRP 120
  121 KVLFYCHFPD QLLSSREGLL KRLYRLPINW LEEHTIGLAD KVLVNSKFTL RVFQDTFRRL 180
  181 STVPDVLYPS LHTQYFDQMQ KKLEQRSALL DEPVHPRVPL NAFIYLDINR YERKKNHALA 240
  241 LHSLRLLGDM LPATEFKRCR LIIAGGYDTR CMENVEHFAE LEHLTEELKL QDHVVLLRSP 300
  301 TDEEKCRLLF AAHCLLYTPE NEHFGIVPLE GMYCSKPVVA LNSGGPTETV VNTSTGFLCE 360
  361 KTEKSFGGAM LQLFRDEQLR VKMGDQGHKR VQQKFSFQAF ADRLNGIIRD LVPISRESSA 420
  421 KKNK

Type	Start	End	Confidence
Cytoplasmic	1	68	0.53
Transmembrane Helix	69	87	0.51
Non-Cytoplasmic	88	424	0.96