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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|16768036
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCAPRNNTCE ASKFYCKNGR CISRMWSCDG DDDCGDNSDE DPNYCAYHSC SPNEFRCNNG  60
   61 RCIFKSWKCD HENDCKDGSD ELGCVYPPCV DGEFTCANGR CIPQAQVCNG VNDCKDNATS 120
  121 DETHERCPMN TTCPANHLKC EKTNICVEPY WLCDGDNDCG DNSDEDPLHC GQRTCPTNSF 180
  181 RCPNHRCIPA TWYCDGDDDC GDGADEPPDY CKSEGRTCFG DLFTCDNGNC IPRIYICDGD 240
  241 NDCLDNSDED NRHQCNDRKC DEETEFTCVE NKSWQRAQCI PKKWICDGDP DCVDGADENT 300
  301 TLHNCATQQP CGEDMFTCGN GRCINKGWIC DHDNDCGDGT DEGKFCNSKY KTCSAQEFTC 360
  361 QNFKCIRNQS RCDGEDDCGD HSDEVGCAKE NITCPQGQFA CTNGQCIDYN LVCNKYPDCA 420
  421 DESDEPAHCN VDECAKVEIN QCGHKCVDTL TGYYCDCNEG YKLLADGKAC ADVDECLEQP 480
  481 GACSQHCSNT PGGFYCKCDE TYYERQNDEH TCKRKDKIPP WLIFTNKYYV RNMSVDGHQY 540
  541 NLMHQDLMNV VALDFDIREE YMYFCDVTAK TIFRAKYGEA DDEMPPEREA VIRHDSHGLE 600
  601 GIAIDWVGRK LYWLDRHSKN LDVSELDGSK RKTLRSGVVD PRAIVVHPGI GYLYFTSWHL 660
  661 QAYIAKMGMD GSNFSRILNW NDGIAWPNAL SIDYFTDRIY WADAHLDYIA YADLEGRHRH 720
  721 TVLSGSKVPH VFALSLFDDY IYWSDWNLKA IVRANKFHGA NYTVLRNTTH RPYDLHINHP 780
  781 LRQLPYTNPC GTNNGGCSHL CLIAPPPEST YLNIEGYIEE GAPIFKCACP NQFYLARDMK 840
  841 TCVANCTAGQ HLCGGRDEKC IPWFWKCDGE KDCKDGSDEP ATCAPRHCRA GTFQCKNTNC 900
  901 TPSATICDGV DDCGDRSDEQ NCDLPCPLSD FKCKSSGRCI LDSWRCDGDA DCKDGSDEDP 960
  961 AVCFKRTCDP KTEFSCKNGR CIPQLWMCDF DNDCGDDSDE PAYMCRQRNC TTGWQRCPGQ1020
 1021 SNYRCIPKWL FCDGKDDCRD NSDELPENCP KCNPETDFKC GNNRCIPKQW MCDFADDCGD1080
 1081 ASDENEAVCK GRYRECSESE FRCGNGKCIS SRWQCDHEDD CGDNSDEMHC EGYQCKNGTF1140
 1141 QCASGHCIAS YFRCDGDRDC RDMSDEVGCP PRFPGGRYCP ESRFQCNNNL CVSLSDLCDG1200
 1201 TDDCGDGSDE DPSVCSDFNC DTLRRFQCSN ERCVARYQIC DGVDNCGDGS DENNMTLCAS1260
 1261 KQKPCDLYTQ YQCANKHCIE RSQVCDFSDD CGDASDELGC HHTSSCSEAN RGGCQQHCHN1320
 1321 LTDGGYICTC YPGYIIAADN KKKCSDVDEC LTRQHTCSHQ CHNLNGTYSC SCREGFHLTD1380
 1381 GASGVCRAEK EDVILLFVNG QEIRGLNWHK SEEFAVIAAE KRIEALDYDA QQQIVFWADS1440
 1441 YDKTIKRSYM VNAIDGRAKI GFAQDLNMKG GSKPTAVAVD WLASNLYWTE MDRTGSKPRG1500
 1501 RVMVAKTDGR YRRSIVNAGL EVPTSIAVNP QLGRIYWSDA GSAPKIEVSW MDGSKRRPLI1560
 1561 TEMIRHPAGL TIDYSQDHII YWVDTKLNAI ESMRADGSRR KAIVRGDQLR HPVSLDLFES1620
 1621 NMFWMTRDTG ELVRQDKFGR GVQVVLHRYI VNPSGLKVYH DKRYNTSLPN PCDNSTCSHL1680
 1681 CLLVPGGHRC ACPDASGPPP SHRSTAEVIC NAAAEHPRPA PRICPCQNGG LCKEDAQGEL1740
 1741 LCECRTQFVG EHCETSTMGA FGHGDANVTA VVVPIMVILL VMMAAAGAWY VIRKRPFGKL1800
 1801 ARMPAMTSSQ SVTFRHGSNV EFNESGFPGA SAPGAGDVAP IEGYNLQTVN ANKARDFANP1860
 1861 MYDAVQSGTT ADPGMGNGSG IYDVPGEPSA KVKSMGHHAG GSFTEPASAI IAPSSITHKA1920
 1921 SPQLQLRTRE LDPSADTGKD TQFLVEEDKS EC

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