YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16648468
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.61
Transmembrane Helix	17	38	0.87
Cytoplasmic	39	47	0.52
Transmembrane Helix	48	68	0.79
Non-Cytoplasmic	69	131	0.73
Transmembrane Helix	132	153	0.91
Cytoplasmic	154	166	0.93
Transmembrane Helix	167	188	0.87
Non-Cytoplasmic	189	219	0.91
Transmembrane Helix	220	239	0.96
Cytoplasmic	240	259	0.93
Transmembrane Helix	260	280	0.88
Non-Cytoplasmic	281	285	0.63
Transmembrane Helix	286	305	0.67
Cytoplasmic	306	319	0.78
Transmembrane Helix	320	339	0.86
Non-Cytoplasmic	340	344	0.60
Transmembrane Helix	345	366	0.86
Cytoplasmic	367	389	0.86
Transmembrane Helix	390	409	0.89
Non-Cytoplasmic	410	414	0.72
Transmembrane Helix	415	433	0.59
Cytoplasmic	434	467	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFCTQHEFD FLSLRVYVGV WLIIIALTVS AFEGSVYVRL LTRFTQEIFS ALITLIYIVE  60
   61 TFMKLISIYR ENPLLSDYNL PPPTLVAHEH ATNESLLNAT ASVTTNITQM VMNISTTAMP 120
  121 IGPPPLPKNQ PNTALFCTIL TLATFVVAYY LKLFRNSHFL GRNARRALGD FGVPISIAIF 180
  181 VLVDYLVPAV YTEKLVVPEG LSPSDPSKRG WYIGFDTSST WIPFACVIPA LLVYILIFME 240
  241 SQISELIVDK PDRGLKKGSG LHWDIVLLCL LNCACGIFGM PWHCAATVRS VTHVSSVTIM 300
  301 SRTHAPGESP RIVDVKEQRL SGFFVCLMIG LSVLMAPLLR LIPMAVLFGV FLYMGVASMS 360
  361 GVQLFERIRL YFMPVKHYPP TSYVKRLRPW KLHLFTTIQV LCLVLLWSVK SSQFSLAFPF 420
  421 FLIMMVPIRQ NLTKLYKPEE MQALDGSEMK KNDDDEPDFY EQTNIPA