YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAX3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	69	0.96
Transmembrane Helix	70	88	0.90
Non-Cytoplasmic	89	96	0.65
Transmembrane Helix	97	116	0.73
Cytoplasmic	117	126	0.65
Transmembrane Helix	127	150	0.80
Non-Cytoplasmic	151	160	0.71
Transmembrane Helix	161	183	0.89
Cytoplasmic	184	197	0.77
Transmembrane Helix	198	220	0.88
Non-Cytoplasmic	221	233	0.79
Transmembrane Helix	234	257	0.84
Cytoplasmic	258	284	0.81
Transmembrane Helix	285	308	0.85
Non-Cytoplasmic	309	320	0.72
Transmembrane Helix	321	346	0.78
Cytoplasmic	347	357	0.67
Transmembrane Helix	358	381	0.90
Non-Cytoplasmic	382	388	0.69
Transmembrane Helix	389	408	0.91
Cytoplasmic	409	417	0.65
Transmembrane Helix	418	437	0.90
Non-Cytoplasmic	438	459	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSIVEPWAA IAENGNANVT AKGSSRELRH GRTAHNMSSS SLRKKSDLRL VQKVPCKTLK  60
   61 NILSNLQEVI LGTKLTLLFL AIPLAILANS YNYGRPLIFG LSLIGLTPLA ERVSFLTEQL 120
  121 AFYTGPTVGG LLNATCGNAT ELIIAILALA NNKVAVVKYS LLGSILSNLL LVLGTSLFFG 180
  181 GIANIRREQR FDRKQADVNF FLLLMGLLCH LLPLLLKYAA TGEVSTSMIN KMSLTLSRTS 240
  241 SIVMLIAYIA YLIFQLWTHR QLFEAQQDDD DAYDDEVSVE ETPVIGFWSG FAWLVGMTIV 300
  301 IALLSEYVVD TIEDASDSWG LSVSFISIIL LPIVGNAAEH AGAIIFAFKN KLDISLGVAL 360
  361 GSATQISLFV VPLSVIVAWI LGIKMDLNFN ILETSSLALA IIITAFTLQD GTSHYMKGLV 420
  421 LLLCYVIIAA CFFVDQIPQP NDLDVGLQPM NNLGEVFSA