YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16550925
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTHDSEHGH IIEVCQDVPA METGQVGSKV CAEAPCGFSD VRNSLKDARE RSTSTKKLLI  60
   61 AVVLCIIFMS IEVFGGIEAN SLAILTDAAH LLSDVAAYAI SLFSLWASGW EATPRQSYGF 120
  121 FRIEILGALV SIQIIWLLAG ILVYEAIERL INGTTEVHGF LMFIIAAFGL LVNIAMALLL 180
  181 GHDHSHGHGH DHGHGHSHGH DDAHEHSDHA HSHEDHGDLH THGLTIKKHD HHHHGEDSKG 240
  241 HADQLHGHET DQTEPLLQTC SEAEGDSKLG AKQKQQRNIN MQGAYLHVLG DSIQSVGVMI 300
  301 GGAIIWIKPE WTIVDLICTL IFSVIVLGTT IRMLRNILEV LMESTPREID ATRLESGLCK 360
  361 MDEVIAVHEL HIWAITVGKV LLACHVKIKR DANADMVLDK VVDYIRREYK ISHVTIQVER 420
  421 E

Type	Start	End	Confidence
Cytoplasmic	1	57	0.98
Transmembrane Helix	58	77	0.95
Non-Cytoplasmic	78	87	0.78
Transmembrane Helix	88	110	0.87
Cytoplasmic	111	119	0.88
Transmembrane Helix	120	143	0.85
Non-Cytoplasmic	144	158	0.86
Transmembrane Helix	159	180	0.93
Cytoplasmic	181	283	0.99
Transmembrane Helix	284	306	0.92
Non-Cytoplasmic	307	312	0.78
Transmembrane Helix	313	334	0.91
Cytoplasmic	335	421	0.98