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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: IRE1B_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.72
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGSALLDLI LFLLVSPLAH SFKGSEISKF YDKSISNQIS QSDRESGYVL VSTVDGSISL  60
   61 VDMSSQKLDW TFHTNEPIYS SYQAPHYHYT TDEERSSVLG DDFYMDCDKD WRLYNSSVRK 120
  121 GKRVNEIVDA SEFIGTLPYT STDRIVLGKK DTSVFLLDWK TGKLVKRYRM DELYSNTVVE 180
  181 NDKEKAIVLS KEAPLLFGSG FKKSEDFPEL VYIERKDFKI QCISKFGDVL WSVSYAKMEA 240
  241 KLQNHESVQF ISGLSSSVGK NQFPLSYTTS VPMVQLRNVK YETLFPRLGF LDEALYLPFQ 300
  301 DRKPNQLAIG DGNQLTLPGN KEAEEVLSLP LPETVISQIT DIIDGSTKQA GFASKFSGLI 360
  361 VLIFGFCVTM LSVCGLFFYR LRQSIRIKEP YVSEVPIATP KKKKSKKNGT TKAVHKKENG 420
  421 FISGGNKDPS HEENEKRLLT AFPGLNNSSA EGYRVGKLFV SNKEIAKGSN GTVVLEGSYE 480
  481 GRLVAVKRLV QSHHDVAQKE ILNLMASDKH SNIVRWYGVD QDEHFIYISL ELCACSLNDL 540
  541 IYASSALLES PMASSSIHSI QINPIFENGK GVELWKENGH PSPVLLKLMR DIVAGLVHLH 600
  601 DIGIVHRDLK PQNVLIVKNS SLCAKLSDMG ISKRLPADTS ALTRNSTGLG SGSSGWQAPE 660
  661 QLRNERQTRA VDLFSLGCVL FFCMTGGKHP YGDNYERDVN VLNDQKDLFL IESLPEAVHL 720
  721 LTGLLNPDPN LRPRAQDVMH HPLFWNSDMR LSFLRDASDR VELENREEGS QLLAALESTA 780
  781 AVTLNGRWDE KLDSIFLDNI GRYRRYKFDS IRDLLRVIRN KLNHYRELPK ELQELLGSVP 840
  841 EGFERYFSSR FPKLLIQVYT VLFDYCNNEE FFFKYSKTTV F

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle