YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPT1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLSVKQTLS PKIGLFRRNP SSSLGRSPVS LSFPSTELPK RTVLAVSKPL HLSSSLRAKS  60
   61 PVVRCEAYEA DRSEPHPIGD DAAAAETKSE AAKKLKIGIY FATWWALNVV FNIYNKKVLN 120
  121 AYPYPWLTST LSLAAGSLMM LISWAVGIVE TPKTDFDFWK TLFPVAVAHT IGHVAATVSM 180
  181 SKVAVSFTHI IKSGEPAFSV LVSRFILGET FPTSVYLSLI PIIGGCALSA LTELNFNMIG 240
  241 FMGAMISNLA FVFRNIFSKK GMKGKSVSGM NYYACLSMLS LLILTPFAIA VEGPQMWVDG 300
  301 WQTALATVGP QFVWWVVAQS VFYHLYNQVS YMSLDQISPL TFSVGNTMKR ISVIVSSIII 360
  361 FRTPVQPVNA LGAAIAILGT FLYSQAKL

Type	Start	End	Confidence
Cytoplasmic	1	125	0.87
Transmembrane Helix	126	148	0.90
Non-Cytoplasmic	149	164	0.62
Transmembrane Helix	165	186	0.72
Cytoplasmic	187	209	0.63
Transmembrane Helix	210	231	0.80
Non-Cytoplasmic	232	237	0.74
Transmembrane Helix	238	257	0.93
Cytoplasmic	258	268	0.94
Transmembrane Helix	269	291	0.91
Non-Cytoplasmic	292	303	0.85
Transmembrane Helix	304	326	0.69
Cytoplasmic	327	357	0.71
Transmembrane Helix	358	383	0.72
Non-Cytoplasmic	384	388	0.53