YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7144496
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTVLRFKPF RVAYKQFHNY FLSEKEAGCT LADLDFDTDI RKSIQKLRSH EFTPGEIVHY  60
   61 TFLTSLILFV YVIFPASFLL KTPILAAFGF CFLLPLTSQF FVSALPIFTW LALFFSASKI 120
  121 PVDWKPVISV KFLPAMETIL YGDNLSNVLA ATNNWVLDIL AWLPYGIIHF SSPFVVALFI 180
  181 FLFAPPTSLR SFGFAFGYMN VVGVLIQLCF PSAAPWYKNL HGLEPANYSM NGSPGGLGRI 240
  241 DELFGVDMYT TTFMNSPLVF GAFPSLHSGC AVMDVLFLCW LFPRFTYVWW SYACLLWWST 300
  301 MYLTHHYFID LIFGAALSVL VFNYVKYTQL PVVDPTKFCR WSYTTVELLD INANDPLQSF 360
  361 VPLHGDMEEG MSHPFYHAPA LENFEMSTIN RSRESVAAPF PTIAEDVAEE TDSSASNSVF 420
  421 DAERFDEETH PSSRTSSTSL NDLLLPSSSS SSKPKRST

Type	Start	End	Confidence
Cytoplasmic	1	56	0.57
Transmembrane Helix	57	79	0.87
Non-Cytoplasmic	80	85	0.43
Transmembrane Helix	86	115	0.76
Cytoplasmic	116	126	0.44
Transmembrane Helix	127	141	0.37
Non-Cytoplasmic	142	161	0.71
Transmembrane Helix	162	184	0.90
Cytoplasmic	185	193	0.73
Transmembrane Helix	194	214	0.92
Non-Cytoplasmic	215	257	0.82
Transmembrane Helix	258	282	0.80
Cytoplasmic	283	286	0.56
Transmembrane Helix	287	301	0.60
Non-Cytoplasmic	302	302	0.31
Transmembrane Helix	303	327	0.69
Cytoplasmic	328	458	0.56