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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|6934272
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.82
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSARHPALGL LLLLLCPAQV FSQSCVWYGE CGIAFGDKKY NCKYSGPPKP LPKDGNDLLQ  60
   61 ELCPGFFFGN VSLCCDVQQL QTLKSNLQLP MQFLSRCPSC FYNLMTLFCE LTCSPHQSQF 120
  121 LNVTATEDYV DPKTQENKTN VKELEYYIGQ SFANEMYNAC RDVEAPASNE KALGILCGKD 180
  181 ASACNATNWI EYMFNKNNGQ APFTITPIFS DLPILGMEPM RNATKGCNES VDEVTGPCSC 240
  241 QDCSIVCGPK PQPPPTPVPW RILGLDAMYV IMWVTYMAFL FIFFGGLLAV WCHRRRYFVS 300
  301 EYTPIDSNIA FSSNTSDKGE ASCCDPLGAA FDDCLRRMFT KWGAFCVRNP TCVIFFSLVF 360
  361 ITACSSGLVF VRVTTNPVEL WSAPHSRARL EKEYFDKHFG PFFRMEQLII QAPNTSEHIY 420
  421 EPYPSGSDVS FGPPLNKEIL HQVLDLQIAI ESITTSYNNK TVTLQDICVA PLSPYNKNCT 480
  481 IISVLNYFQN SHSVLDHQVG DDFYVYADYH THFLYCVRAP TSLNDTSLLH DPCLGTFGGP 540
  541 VFPWLVLGGY DDQNYNNATA LVITFPVSNY YNDTEKLQRA QAWEKEFIDF VKSYKNPNLT 600
  601 ISFIAERSIE DELNRESNSD VFTIAISYAI MFLYISLALG HIKSCSRLLV DSKISLGIAG 660
  661 ILIVLSSVAC SLGVFSYMGM PLTLIVIEVI PFLVLAVGVD NIFILVQTYQ RDERLQEETL 720
  721 DQQLGRILGE VAPTMFLSSF SETSAFFFGA LSSMPAVHTF SLFAGLAVLI DFLLQITCFV 780
  781 SLLGLDIKRQ EKNRLDILCC VGGTDNGRGI QASESYLFRF FKNSFAPFLL KDWLRPIVIA 840
  841 VFVGVLSFSI AVMNKVEIGL DQSLSMPNDS YVIDYFKSLG QYLHSGPPVY FVLEEGHDYT 900
  901 THKGQNMVCG GMGCDNDSLV QQIFNAAELD NYTRIGFAPS SWIDDYFDWV APQSSCCRLY 960
  961 NATHQFCNAS VIDPTCIRCR PLTPEGKQRP QGKEFMKFLP MFLSDNPNPK CGKGGHAAYS1020
 1021 SAVNIIGDDT YVGATYFMTY HTVLKTSADY IDAMKKAQLV ARNITETMNS KGSNYRVFPY1080
 1081 SVFYVFYEQY LTIIDDTIFN LSVSLGSIFL VTLVVLGCEL WSAVIMCITI AMILVNMFGV1140
 1141 MWLWDISLNA VSLVNLVMSC GISVEFCSHI TRAFTMSTKG SRVSRAEEAL AHMGSSVFSG1200
 1201 ITLTKFGGIV VLAFAKSQIF EIFYFRMYLA IVLLGATHGL IFLPVLLSYV GPSVNKAKRH1260
 1261 TTQERYKGTE RERLLNF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle