YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16118854
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.99
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	192	0.97
Transmembrane Helix	193	212	0.90
Cytoplasmic	213	245	0.91
Transmembrane Helix	246	268	0.86
Non-Cytoplasmic	269	276	0.72
Transmembrane Helix	277	300	0.91
Cytoplasmic	301	316	0.81
Transmembrane Helix	317	339	0.92
Non-Cytoplasmic	340	345	0.82
Transmembrane Helix	346	365	0.94
Cytoplasmic	366	371	0.75
Transmembrane Helix	372	391	0.88
Non-Cytoplasmic	392	429	0.91
Transmembrane Helix	430	451	0.90
Cytoplasmic	452	461	0.86
Transmembrane Helix	462	482	0.95
Non-Cytoplasmic	483	490	0.79
Transmembrane Helix	491	510	0.91
Cytoplasmic	511	538	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTHILVPLY LALLASSLCF ASAGDIVHQD DKSPKRPGCD NNFVLVKVPT WVDGVEDIEY  60
   61 VGVGARFGRT LEAKEKDANK TKLVLADPPD LCQPPKFKLN RDVILVHRGN CSFTTKAKIA 120
  121 ELANASAILI INTETELLKM VCEANETDVH IQIPAVMLPQ DAGGSLRDYM QNSSQVSVQL 180
  181 YSPERPLVDV AEVFLWLMAV GTILGASYWS AWSAREIAIE QDKLLKDGSD DFTHGEGVPS 240
  241 TGVVNINTTS AILFVVIASC FLVMLYKLMS VWFMDVLVVL FCIGGVEGLQ TCLVALLSCF 300
  301 RWFQHPGESF IKLPVVGAIS HLTLAVSPFC IVFAVIWAIH RRDSFAWIGQ DILGIALIIT 360
  361 VLQIVHVPNL KVGTVLLSCA FLYDIFWVFV SKLWLKDSVM IVVARGDKSG EDGIPMLLKI 420
  421 PRMFDPWGGY SIIGFGDIIL PGLLVTFALR YDWLTKKNLR AGYFLWAMTA YGLGLLVTYV 480
  481 ALNLMDGHGQ PALLYIVPFT LGTFLTLGKT RGELKALWTR GEPDSPCPHV QLQSSQSQ