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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|6694424, gi|6...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.89
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNINQIMSLF VCFCLFSSIY LINTVHSQGP FPYNTTEGCS MNGLNASYIE SGLYPPYHNQ  60
   61 ILAPGTCQYS HPEYSETSCC TNGQTLVLLS NMVMGSAVFA RCPACLFNVW DLWCASSCSP 120
  121 YQQSFMVPTS IDSKTGQILS VDFVIHPDYA WGLYNSCSGV NSDGAPPFGT IFHTPQDFFS 180
  181 GIFALNPAFS INWVFNETGY ISPTAPCAES CSCDQCGDAC GPPPTVGEIG LFNNSLPQTY 240
  241 LFNHEIPFLS VWMIWTFIMF TLVLTYGTSM GLVLFGNVKF FDSTKVKVIA SLVLSISFIS 300
  301 AILIPFISGK VPLHDSSCQW KMPSDQLWNC SLALGVGIYE LITFIFLFVI SIVIIVLYHI 360
  361 GSNNRPIPGS SSNASVVYDA LISSNSSNND NSNSNNNEQQ QQQPSTIIQR FFYWYGHKVA 420
  421 SKPLIVILIC IIITAGLGIG IIKLEIEQDP VKLWVAPDSR AALDKTYFDN NFGPFYRVEQ 480
  481 IIITPKNQTK YPTVIEYDLL LELFEIELSL MSLEAEYEGE LITLDSLCFK PTKRGCLIES 540
  541 TSGLWQRNIS KLNYTQSEEG VLTYYENCQS SLLQPDCMDS VGAPVQPRVV LGGWENNNSS 600
  601 AASAFVVTFL LNNPTDMVNT AMAWEQVWLD HISAIAATSE IFDITYSAER SVQDELSREG 660
  661 NADIPTILIS YFVMFFYVSL SLGSYYPFPT RFLSLFVRSR FALGFCGIII VAASIVISVG 720
  721 VCSMANLKAT LIISEVIPFL VLAIGVDNIF IIVNTFESLH VVRYDPHTRA AILPTSEDSL 780
  781 ARTLAKVGPS IALASLSESL AFLLGSLTKM PAVQAFSYYA ALAIFVDFLL QVSAFSALLV 840
  841 LDSKRASSRR IDCLPCIALE DGDNSDMEDD DDEENEKLPF ARADINANFK NSQPTYSTSS 900
  901 SPKKTTLLQV VFKKFYAPFL LHPITKMLVI IFFVGLLLTG INFAFQVSIG LDQRVALPSN 960
  961 SYLQGYFNNM ANLLEVGPPF YIVIKGDYNY TDFESQNKLC TMGGCDKDSI VNVFNNAPFI1020
 1021 NKGISSWLDD YISFAQAQGS CCLKYPNGSI CYNGADPSCA PCFSNNAQGR PDPQSFIQYL1080
 1081 PFFLNVSNTA SCPLAGLAYT SDAHIVNGTI VASRFDGYHT TLRTQDDYIN AVQTAYYLAD1140
 1141 NSDLDVEVYS IIYVYFDQYL TIKSVAIMDI LLALGGVFIV CLILLLNPLV SFLVVISVGM1200
 1201 ICVDLLGIMA LWNISLNAVS VVNVVMAIGI GIEFCVHIAS TFINAPKHFS RDQKAKYAVT1260
 1261 EMGSSIISGI FITKLLGVVV LGFSTSEIFT VYYFRMYLSI VFLGGLHGLV FLPVLLSLFG1320
 1321 TDTLQLDRLC KSKKNSYSLN DE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle