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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|6671365
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPSAGSFSG DRDDDGDATK KKKKQRKVPL LKLFSFADFY DHVLMGLGSL GACVHGASVP  60
   61 VFFIFFGKLI NIIGMAYLFP KEASHKVAKY SLDFVYLSVA ILFSSWIEVA CWMHTGERQA 120
  121 AKMRMAYLKS MLNQDISLFD TEASTGEVIS AITSDIIVVQ DALSEKVGNF MHYISRFIAG 180
  181 FSIGFARVWQ ISLVTLSIVP LIALAGGIYA YVATGLIARV RNSYVKAGEI AEEVIGNVRT 240
  241 VQAFAGEERA VKSYKDALMN TYTYGKKAGL TKGLGLGSLH CVLFVSWALL VWFTSIVVHK 300
  301 NIANGGDSFT TMLNVVISGL SLGQAAPDIS AFIRARAAAY PIFEMIERNT VSKTSSKTGR 360
  361 KLSKVEGNIE LKNVSFSYPS RPDVVIFDRF CLNIPTGKIV ALVGGSGSGK STVISLIERF 420
  421 YEPLAGEILL DGNNIKGLDL KWLRQQIGLV NQEPALFATT IRENILYGKD DATVDEITRA 480
  481 AKLSEAIAFI NNLPDRFETQ VGERGIQLSG GQKQRIAISR AIVKNPPILL LDEATSALDA 540
  541 ESEKSVQEAL DRVMVGRTTV VVAHRLSTIR NADVIAVVQN GKIVETGTHD ELISNPNSTY 600
  601 SSLVQHQETS PLQRYPSQGP TLSRPLSVSY SRELSRTRTS FGASFRSERD SVSRAGADGI 660
  661 DAGKQPYVSP GRLYSMIGPD WYYGFFGTVT ALIAGAQMPL FALGVSQALV AYYMDWETTC 720
  721 HEVKKIAILF CCASVITVIV HAIEHLCFGI MGERLTLRVR EGMFSAILKN EIGWFDDLNN 780
  781 ASSMLASRLE TDATFLRGVV VDRTSILIQN VGLVIAAFII AFILNWRITL IILATFPLII 840
  841 SGHISEKLFM QGYGGNLSKA YLKANMIAGE AVSNMRTVAA FCAEEKILDL YARELIEPSE 900
  901 RSFKRGQIAG IFYGISQFFI FSSYGLALWY GSVLMGKELA SFKSVMKSFM VLIVTALAMG 960
  961 ETLALVPDLL KGNQMVASVF EIMDRKTQVV GDAGEELTNV EGTIELKGVH FSYPSRPDVV1020
 1021 IFKDFDLKVR SGKSMALVGQ SGSGKSSVLA LILRFYDPTS GKVMIDGRDV KKLKLKSLRK1080
 1081 HIGLVQQEPA LFATSIYENI LYGKEGASES EVVEAAKLAN AHSFISSLPE GYSTKVGERG1140
 1141 VQLSGGQKQR VAIARAVLKN PEILLLDEAT SALDVESERV VQQALDRLMR NRTTVMVAHR1200
 1201 LSTIKNADRI SVIQGGRIIE QGTHSSLIEN RNGPYFKLIN LQQQQQMEQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle