YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30697873, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFAPILRRA SAVKNLFSLT RLAVGSALST RSLQTGASGD DSQSMGGYHV SPGGFMRGAV  60
   61 YREPNKPLTI EEFHIPRPKS NEILIKTKAC GVCHSDLHVM KGEIPFASPC VIGHEITGEV 120
  121 VEHGPLTDHK IINRFPIGSR VVGAFIMPCG TCSYCAKGHD DLCEDFFAYN RAKGTLYDGE 180
  181 TRLFLRHDDS PVYMYSMGGM AEYCVTPAHG LAPLPESLPY SESAILGCAV FTAYGAMAHA 240
  241 AEIRPGDSIA VIGIGGVGSS CLQIARAFGA SDIIAVDVQD DKLQKAKTLG ATHIVNAAKE 300
  301 DAVERIREIT GGMGVDVAVE ALGKPQTFMQ CTLSVKDGGK AVMIGLSQAG SVGEIDINRL 360
  361 VRRKIKVIGS YGGRARQDLP KVVKLAESGI FNLTNAVSSK YKFEDAGKAF QDLNEGKIVS 420
  421 RGVVEIL

Type	Start	End	Confidence
Signal Peptide	1	39	0.90
N-region	1	30
H-region	31	36
C-region	37	39
Cleavage Site	39	40
Non-Cytoplasmic	40	427	0.98