YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLCA_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	123	0.99
Transmembrane Helix	124	145	0.94
Non-Cytoplasmic	146	178	0.91
Transmembrane Helix	179	203	0.80
Cytoplasmic	204	222	0.95
Transmembrane Helix	223	243	0.89
Non-Cytoplasmic	244	285	0.84
Transmembrane Helix	286	309	0.89
Cytoplasmic	310	319	0.83
Transmembrane Helix	320	342	0.88
Non-Cytoplasmic	343	366	0.85
Transmembrane Helix	367	389	0.90
Cytoplasmic	390	407	0.80
Transmembrane Helix	408	430	0.83
Non-Cytoplasmic	431	517	0.78
Transmembrane Helix	518	538	0.78
Cytoplasmic	539	539	0.30
Transmembrane Helix	540	563	0.69
Non-Cytoplasmic	564	564	0.33
Transmembrane Helix	565	595	0.71
Cytoplasmic	596	605	0.54
Transmembrane Helix	606	624	0.51
Non-Cytoplasmic	625	863	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRNNNNDNN NNDNGFDDEN KGIFLDSKIE ISDETSLIHK PYHDDYDENG LINNNNNSHN  60
   61 NNNGGNNNNH GPSKVTHRRG KHTFTEADKL KMTKFESLDF PIIDNQIYRE YIRRTSKLNH 120
  121 MLKTFGKWII CFMIGVLVGI TAYLVKQSVE FVNEFKFDQS GKYLEDERKF IAFLVYYSIN 180
  181 ILFGVSASLV IIPVGQIASG SGIPEVKGYL NGIRIPQSMN VKTLVGKLVS LILAYSSGLI 240
  241 LGPEGPMIHI GSMLGGAIGQ VKSKTLKWYP KVLWKYHNDR DRRDFISTGA AAGVAAAFGA 300
  301 PIGGVLFGFE EASSFWSRQL TWRTFFACLI ATFTTNIILQ GFDMQLHDYG VLKFGLSNKY 360
  361 LYKYSELIPF ALIGVAGGLF GALFVNLNAH LSQWRSKFFA NKKIYLRVLE VFILITITST 420
  421 ILYCCAAFTP CRSKTQANGS QTNSLDTSSS SILSSSGDNS KNSTKLFKLL NNASGEDKQE 480
  481 DKFIAFFCEQ GEYNQMAGLS FNSLDAALRL LFSTSTDIFT IPTLAVFSLI SFILTTITSG 540
  541 LMLASGLFIP MMLVGATFGR LVGQVIALFV SVDPCIYALV GASAMMAGFS RMTISLAIIM 600
  601 VELTEGTQYM LPVILSVMIA KWVGDFFNES IYEHLIEQKC YPFLQSQPPK SMIKLGVVDI 660
  661 MKTEVVTLHE VERVSKVIEV LKSEQHFHNG FPVIERPRPL DPNRKDAYGN LEYYEDETTY 720
  721 SGLILRNQLI CLLYYRIFCH EQPLPQNPRL LGGNSNRRYN QRRFGRPTEY GYAPADPRMT 780
  781 YELMTQSLAR HFPPIDKMNL KKEEIETMYI DLRPYMNLST IVANETYSYS ETYSIFRTIG 840
  841 LRHLPVVNKK NEVVGIVTRK DLL