YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6537142
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.95
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARTRWTSPV LLCVSLLLTC GFAEAGKLLV VPMDGSHWFT MQSVVEKLIL RGHEVVVVMP  60
   61 EVSWQLGRSL NCTVKTYSTS YTLEDLDREF MTFAHAQWKA QLRSFFSLFL SSSNGFFDLF 120
  121 FSHCRSLFND QKLVEYLKES SFDAVFLDPF DVCGLIVAKY FSLPSVVFAR GIACHYLEEG 180
  181 AQCPAPLSYV PRILLGFSDA MTFKERVWNH VMHLEEHLFC KYFFKNALEI ASEILQTPVT 240
  241 EYDLYSHTSI WLLRTDFVLD YPKPVMPNMV FIGGINCHQG KPVPMEFEAY INASGEHGIV 300
  301 VFSLGSMVAE IPEKKAMAIA DALGKIPQTV LWRYTGTPPS NLANNTILVK WLPQNDLLGH 360
  361 PMTRAFITHA GSHGIYEGIC NGVPMVMMPL FGDQMDNAKR METKGAGVTL NVLEMTSEDL 420
  421 ENALKAVIND KSYKENIMHL SSLHKDRPVE PLDLAVFWVE FVMRHKGAPH LRPAAHDLTW 480
  481 YQYHSLDVIG FLLAIVLTVA FIAFKCCAYG YRKCFGKKGR VKKAHKSKTH

Type	Start	End	Confidence
Signal Peptide	1	25	0.98
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	487	0.99
Transmembrane Helix	488	511	0.85
Cytoplasmic	512	530	0.93