YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1354505
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIYTSDNYS EEVGSGDYDS NKEPCFRDEN ENFNRIFLPT IYFIIFLTGI VGNGLVILVM  60
   61 GYQKKLRSMT DKYRLHLSVA DLLFVITLPF SDAMADWYFG KFLCKAVHII YTVNLYSSVL 120
  121 ILAFISLDRY LAIVHATNSQ SARKLLAEKA DIIFADVSQG DGRYICDRLY PDSLWMVVFQ 180
  181 FQHIMVGLIL PGIVILSCYC IIISKLSHSK GHQKRKALKT TVILILAFFA CWLPYYVGIS 240
  241 IDSFILLEVI KQGCEFESVV HKWISITEAL AFFHCCLNPI LYAFLGAKFK TSAQHALNSM 300
  301 SRGSSLKILS KGKRGGHSSV STESESSSFH SS

Type	Start	End	Confidence
Cytoplasmic	1	39	0.49
Transmembrane Helix	40	62	0.90
Non-Cytoplasmic	63	74	0.48
Transmembrane Helix	75	95	0.62
Cytoplasmic	96	106	0.59
Transmembrane Helix	107	127	0.72
Non-Cytoplasmic	128	180	0.95
Transmembrane Helix	181	203	0.92
Cytoplasmic	204	216	0.93
Transmembrane Helix	217	239	0.87
Non-Cytoplasmic	240	269	0.87
Transmembrane Helix	270	286	0.82
Cytoplasmic	287	332	0.83