YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|211585935
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	93	0.87
Transmembrane Helix	94	117	0.69
Non-Cytoplasmic	118	123	0.58
Transmembrane Helix	124	144	0.87
Cytoplasmic	145	148	0.74
Transmembrane Helix	149	168	0.75
Non-Cytoplasmic	169	176	0.78
Transmembrane Helix	177	198	0.92
Cytoplasmic	199	205	0.68
Transmembrane Helix	206	229	0.82
Non-Cytoplasmic	230	258	0.89
Transmembrane Helix	259	280	0.83
Cytoplasmic	281	292	0.84
Transmembrane Helix	293	315	0.82
Non-Cytoplasmic	316	386	0.69
Transmembrane Helix	387	407	0.65
Cytoplasmic	408	421	0.75
Transmembrane Helix	422	445	0.85
Non-Cytoplasmic	446	480	0.57
Transmembrane Helix	481	515	0.82
Cytoplasmic	516	842	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFQKWGEANS NIGQSLAKVL GIKLAYRDPL GATGETVTRG ESAFSMGTVD TYSYNEPEPT  60
   61 SIDWIREITP SGAQLGRYLL NLFPFLTWIG NYNLTWLWGD LVAGITVGAV VVPQGMAYAN 120
  121 LAGLPVQYGL YSSFMGVLIY WFFATSKDIT IGPVAVMSTL TGTIVTEVQD IYPDYPAHLI 180
  181 ASALAVICGG IVLVMGLLRI GFIVDFIPLP AISAFMTGSA LSICSGQVPT MLGETADFST 240
  241 RGATYEVIIN TLKYLPTSTL DAAMGVTACA MLYIIRSVCT YAARKQPARA KMWFFVSTLR 300
  301 TVFVILFYTM ISAATNLHRK DNPAFKLLGS VPRGFQQAAV PTMDAKIIKA FVGELPAAVI 360
  361 VLLIEHIAIS KSFGRVNNYT IDPSQEFVAI GVSNLLGPFL GGYPATGSFS RTAIKSKAGV 420
  421 RTPLAGVITA VVVLLAIYAL PALFFYIPKA SLAGVIIHAV GDLITPPNTV YQFWRVSPLD 480
  481 AIIFFIGVLV TVFSSIENGI YCTVCVAVAV LLFRVAKARG QFLGRVTIHS VVGDHLLDGD 540
  541 GKYGSFGTNK TPSDDEEHHH RTIFLPLNHT DGSNPDIEVE QPLPGIFIYR FAEGFNYPNA 600
  601 NHYTDSLVAN IFKNTRRTNP NTYKNRGDRP WNDAGPRRGK EGSDDDSHLP LLQAVILDFS 660
  661 SVNNVDVTSI QNLIDVRNQL DMYASPRTVQ WHFAHINNRW TKRGLAAAGF GYPTPVASDG 720
  721 FHRWKPIFSV AEIEGSASAA AHAEIIANQR DQSQKPSDIE SGFKSDSNTT ARETDGIETA 780
  781 SEDSEVIRED KFNREITDSK AYQRRPKVAL VQGMNRPFFH IDLTSALQSA VANSSDEIPH 840
  841 IE