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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|6288773
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.75
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLLAIMKQL FNIIHCDHLN GHVRSIYDNL NTDICGIDRC ARVFTFFSIF LLLFGLMFVY  60
   61 SRYKKCHKTL LTFHNGRAAI SLILLALNSF ELARIFLPHQ NVRNLNRLFQ SSPRDLNYLV 120
  121 VIGSGELWNA LFSTLLTLML MLYHRMVERK KATVFLYAST AVEALTFALL SNELFELVRY 180
  181 EDFLELQTCL VAMSAMCMVS LAMLDGLTVY KECYHDDYLD DYGKIGYKHS MATFYSKSCF 240
  241 WWLTPLLWLG YKEPLELEDL GQMKLEDSAR SHYDHFLYIY TEKKKKSNSS PSLWYCYIKN 300
  301 SWQMFALGGI LKLAGDLFAL IGPLAIQKIV EYIEQLYAQA SEPPAKSPGN EVANVLLSTS 360
  361 RILGTEFDEV FGTNIDKGLI YRKSLLLNAD GGCDSSDSAG QVQSTSSTSD EKQKNDDSVA 420
  421 TPEHVDNPSE PNISHDIGGI TNHMTEDTRS IMEFFLIIHY AWAIPFKIAV VIYLLYMNLG 480
  481 ISAVIGSIAC IVIMTPLQFF IGNAMSKNAE VIAGYTDERL KRIHDTLVGI KVIKLNAWDE 540
  541 VFLKKIQEAR RKELKYLNKD ATFWTLMAVL THIATVLITF VTLGVYVWLH RDQEFDLNAS 600
  601 RLFSSLALFQ QLTVPLLIFP ITVPIIIAAR VSTRRLERFL KSSEIQKQFE GIRNMARILS 660
  661 KSDASLDMYE TQEKSNMTMR TAQAENRLNE KRLAQKSQTP ELATNSTPLL QNAEESAEDI 720
  721 SPSTVQELGH NKLVQQGREL LRNTPYVAIR PPKMRGSVME RPVEFSVIRA RNTDSWRRDS 780
  781 LLLKMPDDIA VSINDGLFTW QPQSQMPVVQ LHVPGIIVPK GKLTIVVGKN GSGKTSLLSA 840
  841 LLMEMPLLAG NMFWHKTCTI SYVSQQPWLL NDTIRENILF GESFRPKRYD FVLEACALKP 900
  901 DIELMPRGDL SIIGERGINI SGGQRQRIAI ARAIYSSANV VIMDDPLASL DNEVGEHIFQ 960
  961 HCIREMLQKS NRTFILVTQQ LHRIKEAEYL IAIKDGRVEA CGSYADIELM QPRITAEWNA1020
 1021 IIAMAKAEND NPSQNPGEKT AGERWKLLKN VSKLGLQRSI SVTMDANVAC HADAIDGSGC1080
 1081 ISVANMQSNV VEEDDQVSVS YPIGNASCGG FNLQRKRSSI YGSRHLMYDV PLPIDECQGD1140
 1141 DVIMRPRRRH TLGRRGSRNT NSSHRLSGLS TLTATSESSS ISGDVLSRSV LATSCSSYAE1200
 1201 SSVDGGDLAT AAPEPRVQSW QPPQHVTHHQ PLSRNASSPP AMEVANPDVK KSEEARRSNT1260
 1261 SSESPLDDHV RGSFQQFLRR MSMRRSNKPK NHHHPLSATN SILSISEESP PVVHFPASIL1320
 1321 ATDGNKNETQ SEEKPKKCVN IDSKETTINC DDNCYSASDK ELRANVTSSP ADQEQHNERH1380
 1381 VLAEVAGESG RESMPLARLA IDTERKYGKI SDDIYLMYIR AAGLPIITIF FITALIWQCL1440
 1441 RVYTDIWLQQ WSNVHGRVAS KGHVVLHPSE QDHEVTYYFR MYAAISCVCI IMALVSTPAG1500
 1501 QYAGCNARRN LHDKLLQTIL HKTLHFFQVT PLGRIVNRFS NDMAVIDKKI AATGQRLLQF1560
 1561 TLLCLSAILI NVTITPWILV LTLPICGAYY LIQKFYRCSA RELQRIENTT NSPVISHLSE1620
 1621 TIQGVTTIRA FNQQTRFTEI LFKRLEANTI AYALLNTSHR WLGVSLDYLG GCIVFVATVT1680
 1681 ALTAASVSCR RHYEATTSPS ASASPSPFET YAVTKSPSEL RPSPSLVGLA INYTLLVPIY1740
 1741 LNWVVKLLAD MEMYAGSVER IAQYAQGQDA DADTDADVDA DLDHEPSSNE DVSAEVDRSS1800
 1801 QSDAGDKVYP GATTAAGDVD EDGDQQRIGG ARGGGGDCGY RQGHENGAEA NADKLNAGNV1860
 1861 TGDGNHLNFH HPPATAGDKV EQATTKTSVI KDKQLPPQQD DKDKKVVLPN EPARKLERYQ1920
 1921 SVPISWPQRG DIHFDNVSLR YEGQKQNVIS NLTLKIPAGQ RIGICGRTGS GKSSLGLSLF1980
 1981 GVLQTTRGHI YIDDVDIQRI RPDELRTRLS IIPQDVHLFN ATIRENLDPH GYFQDLQLWN2040
 2041 CLELAQLKEF VNGHLPLGLD TVICDGGLNL SAGHRQLLCL ARAILRGSVC LVLDEATSVL2100
 2101 DSSTESALLK AADLAFRGRT IITIAHRLTT ILDYDRLIVL DQGRIVEDGN PRELQQLEGS2160
 2161 VFRGLLEKGA SKW

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle