YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6175524
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	509	0.96
Transmembrane Helix	510	531	0.94
Cytoplasmic	532	540	0.86
Transmembrane Helix	541	562	0.89
Non-Cytoplasmic	563	592	0.87
Transmembrane Helix	593	615	0.83
Cytoplasmic	616	622	0.84
Transmembrane Helix	623	642	0.96
Non-Cytoplasmic	643	651	0.77
Transmembrane Helix	652	674	0.89
Cytoplasmic	675	760	0.89
Transmembrane Helix	761	781	0.91
Non-Cytoplasmic	782	1192	0.92
Transmembrane Helix	1193	1213	0.91
Cytoplasmic	1214	1221	0.77
Transmembrane Helix	1222	1244	0.78
Non-Cytoplasmic	1245	1277	0.79
Transmembrane Helix	1278	1298	0.86
Cytoplasmic	1299	1312	0.71
Transmembrane Helix	1313	1334	0.94
Non-Cytoplasmic	1335	1342	0.66
Transmembrane Helix	1343	1366	0.84
Cytoplasmic	1367	1465	0.62
Transmembrane Helix	1466	1487	0.93
Non-Cytoplasmic	1488	1499	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLASDKKDA DVASTTTTAQ DDDNLSTYHG FDHHVQDQVR QLARTLTQQS SLHQKKEHTL  60
   61 PEEGINPIFT NTEADDYNPR LDPTSDEFSS AEWVQNMSNI SNSDPDYYKP YSLGCYWKDL 120
  121 VATGESADIE YQANFLNGPY KGLKTVYNTV VPSTASSKDK NFKILKSMEG AVNPGELLVV 180
  181 LGRPGSGCTT LLKSISSNTH GFNIAKDSTI SYSGMTPNDI RKHFRGEVVY NAEADIHLPH 240
  241 LTVYQTLLTV ARLKTPQNRL KGIDRETYAR HLTEVAMATF GLSHTRNTKV GNDLVRGVSG 300
  301 GERKRVSIAE VSICGSKFQC WDNATRGLDS ATALEFIRAL KVQASISNAA ATVAIYQCSQ 360
  361 DAYDLFDKVC VLYDGYQIYL GPAGKAKRYF QKMGYVSPER QTTADFLTAV TSPSERIINQ 420
  421 DYINRGIFVP QTPKEMWEYW RASEDHADLI KEIDSKLSDN YDANLAEIKD AHVARQSKRA 480
  481 RPSSPYTVSY GMQIKYLLIR NFWRIKQSSG VTLFMVIGNS SMAFILGSMF YKVMKHNTTS 540
  541 TFYFRGAAMF FAVLFNAFSS LLEIFSLFEA RPITEKHRTY SLYHPSADAF ASILSEVPAK 600
  601 LITAVCFNII YYFLVNFRRN GGVFFFYFLI NIVAVFAMSH LFRCVGSVSK TLSAAMVPAS 660
  661 MLLLGLSMYS GFAIPRTKIL GWSKWIWYIN PLAYLFESLM INEFHDRKFP CSQYIPSGSV 720
  721 YNNVPADSRI CSSVGAIRGN DYVLGDDFLR ESYSYLHKHK WRGFGIGLAY VIFFLVLYLI 780
  781 LCEYNEGAKQ KGEILVFPQN IVRRMKKERK LKNVSSDNDV EIGDVSDISD KKILADSSDE 840
  841 SEESGANIGL SQSEAIFHWR NLCYDVQIKK ETRRILNNVD GWVKPGTLTA LMGASGAGKT 900
  901 TLLDCLAERV TMGVITGEVS VDGKQRDDSF ARSIGYCQQQ DLHLKTSTVR ESLRFSAYLR 960
  961 QPADVSIEEK NQYVEDVIKI LEMEQYADAV VGVPGEGLNV EQRKRLTIGV ELAAKPKLLV1020
 1021 FLDEPTSGLD SQTAWSICQL MKKLANHGQA ILCTIHQPSA ILMQEFDRLL FLQRGGKTVY1080
 1081 FGDLGDGCKT MIDYFESHGS HKCPPDANPA EWMLEVVGAA PGSHANQDYH EVWRNSDEYQ1140
 1141 KVQEELEWMS NELPKKNTNN SETVHKEFAT GVLYQCKLVS PRLFQQYWRS PDYLWSKFFL1200
 1201 TIFNNIFIGF TFFKADRSLQ GLQNQMLAVF MFTVIFNPLL QQYLPSFVQQ RDLYEARERP1260
 1261 SRTFSWKAFI VSQILVEIPW NILAGTVAFV IYYYAIGFYS NASVAHQLHE RGALFWLFSC1320
 1321 AFYVYIGSLA LFCISFNQVA EAAANMASLM FTLSLSFCGV LVTPNGMPRF WIFMYRVSPL1380
 1381 TYLIDGMLST GVANVAIKCS NYELLRFSPA ANLTCGEYLG PYLQTVKTGY IVDPSATDTC1440
 1441 ELCPYSHTND FLSSVSSKYS RRWRNWGIFI CYIAFNYIAG IFLYWLARVP KKSGKLAKK