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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PMTE_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSKHNPPGN NRSRSTLSLL VVVGLCCFFY LLGAWQKSGF GKGDSIAMEI TKQAQCTDIV  60
   61 TDLDFEPHHN TVKIPHKADP KPVSFKPCDV KLKDYTPCQE QDRAMKFPRE NMIYRERHCP 120
  121 PDNEKLRCLV PAPKGYMTPF PWPKSRDYVH YANAPFKSLT VEKAGQNWVQ FQGNVFKFPG 180
  181 GGTMFPQGAD AYIEELASVI PIKDGSVRTA LDTGCGVASW GAYMLKRNVL TMSFAPRDNH 240
  241 EAQVQFALER GVPAIIAVLG SILLPYPARA FDMAQCSRCL IPWTANEGTY LMEVDRVLRP 300
  301 GGYWVLSGPP INWKTWHKTW NRTKAELNAE QKRIEGIAES LCWEKKYEKG DIAIFRKKIN 360
  361 DRSCDRSTPV DTCKRKDTDD VWYKEIETCV TPFPKVSNEE EVAGGKLKKF PERLFAVPPS 420
  421 ISKGLINGVD EESYQEDINL WKKRVTGYKR INRLIGSTRY RNVMDMNAGL GGFAAALESP 480
  481 KSWVMNVIPT INKNTLSVVY ERGLIGIYHD WCEGFSTYPR TYDFIHASGV FSLYQHSCKL 540
  541 EDILLETDRI LRPEGIVIFR DEVDVLNDVR KIVDGMRWDT KLMDHEDGPL VPEKILVATK 600
  601 QYWVAGDDGN NSPSSSNSEE E

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle