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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|4204793
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGVELVVSE DKNSNTPTTT TTTNSHQFQE TRMEVKKEEG GDVEKPSSPP PAVGFGELFR  60
   61 FADGLDCVLM IIGSLGAFVH GCSLPLFLRF FADLVNSFGS YANDVDKMTQ EVLKYAFYFL 120
  121 VVGAAIWASS WAEISCWMWT GERQTTKMRI KYLEAALNQD IQYFDTEVRT SDVVSAINTD 180
  181 AVVVQDAISE KLGNFIHYMA TFLSGFVVGF TAVWQLALVT LAVVPLIAVI GAIYTVTSAK 240
  241 LSSQSQEALS KAGNIVEQTV VQIRTVLVFV GEAKALQAYT AALRVSQKIG YKSGFSKGLG 300
  301 LGATYFTVFC CYALLLWYGG YLVRHHFTNG GLAIATMFAV MIGGLALGQS APSMTAFAKA 360
  361 RVAAAKIFRI IDHKPSVDRN AKTGLELDTV SGQLELKNVE FSYPSRPEIK ILNNFNLVVP 420
  421 AGKTIALVGS SGSGKSTVVS LIERFYDPTS GQLMLDGNDI KTLKLKWLRQ QIGLVSQEPA 480
  481 LFATSIKENI LLGRPDATQI EIEEAARVAN AHSFVIKLPD GFDTQVGERG LQLSGGQKQR 540
  541 IAIARAMLKN PAILLLDEAT SALDSESEKL VQEALDRFMI GRTTLVIAHR LSTIRKADLV 600
  601 AVLQQGSVSE IGSHDELMSK GENGMYAKLI KMQEAAHETA LSNARKSSAR PSSARNSVSS 660
  661 PIITRNSSYG RSPYSRRLSD FSTSDFSLSL DAAYSNYRNE KLAFKDQASS FGRLAKMNSP 720
  721 EWTYALIGSI GSVICGSLSA FFAYVLSAVL SVYYNPDHAY MSEQIAKYCY LLIGVSSAAL 780
  781 IFNTLQHYYW DVVGENLTKR VREKMLAAVL KMEMAWFDQE ENDSSRIAAR LSLDANNVRS 840
  841 AIGDRISVIM QNSALMLVAC TAGFVLQWRL ALVLIGVFPV VVAATVLQKM FMKGFSGDLE 900
  901 AAHAKATQLA GEAVANVRTV AAFNSETKIV NLFDSSLQTP LRRCFWKGQI AGSGYGIAQF 960
  961 LLYSSYALGL WYASWLVKHG ISDFSKTIRV FMVLMVSANG AAETLTLAPD FIKGGRAMRS1020
 1021 VFELLDRKTE VEPDDPDATA VPDRLRGEVE FKHVDFSYPT RPDVSIFRDL NLRARAGKTL1080
 1081 ALVGPSGCGK SSVISLIERF YEPSSGRVII DGKDIRKYNL KSLRRHIAVV PQEPCLFATT1140
 1141 IYENIAYGHE SATEAEITEA ATLANAHKFI SALPDGYKTF VGERGVQLSG GQKQRIAIAR1200
 1201 AFLRKAELML LDEATSALDA ESERCVQEAL DRACAGKTTI VVAHRLSTIR NAHVIAVIDD1260
 1261 GKVAEQGSHS HLLKNYSDGI YARMIQLQRF THGEAVNMAT GSTSSSRPKE DQD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle