YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15010376
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.86
Transmembrane Helix	21	40	0.95
Non-Cytoplasmic	41	58	0.86
Transmembrane Helix	59	80	0.84
Cytoplasmic	81	87	0.90
Transmembrane Helix	88	110	0.92
Non-Cytoplasmic	111	165	0.98
Transmembrane Helix	166	186	0.94
Cytoplasmic	187	205	0.92
Transmembrane Helix	206	229	0.92
Non-Cytoplasmic	230	246	0.94
Transmembrane Helix	247	268	0.94
Cytoplasmic	269	332	0.97
Transmembrane Helix	333	354	0.90
Non-Cytoplasmic	355	371	0.90
Transmembrane Helix	372	393	0.93
Cytoplasmic	394	402	0.88
Transmembrane Helix	403	424	0.94
Non-Cytoplasmic	425	549	0.98
Transmembrane Helix	550	569	0.92
Cytoplasmic	570	589	0.90
Transmembrane Helix	590	612	0.92
Non-Cytoplasmic	613	642	0.95
Transmembrane Helix	643	664	0.92
Cytoplasmic	665	698	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPAASGYSR ERFTKDLPIK LLTLLYGIVG CIFSMTYAYF NGTITTIEKR FKIPSKNTGI  60
   61 ISVGNDISQT LVSAVLAYYA GKGHRPRWIG FGLLTIVFFC ILTTAPHFLY GPGEDALALT 120
  121 SEFGGMPDEN ATMEAIEEQR SKTLCRLNGG GAECEVGEGN FAPQLLLFVA QFISGIGGSL 180
  181 YYTLGVSYMD DNTKKSKTPA LLSLSYFLRM LGPAIGYALA SFCLRLYIAP QMHPVINNKD 240
  241 PRWLGAWWLG WLVMGGLLSF SGVFLSMFPK ELPRAVARRK VEENRRREKE RLSVKSTEKE 300
  301 RLTAELDQKT TAEAKASFQD MLKTFRRLIT NKTYMCNTLS SIFYLVGYTP YWIFTPKYIE 360
  361 VQYRQSAATS SMVTGTVALA FSAVGVLLSG FIISRYKPRA RYMAAWNVIV GFLTVAGILA 420
  421 YAFIGCPGNE SSVIVNIHDS SLAGNTTTCN SACSCDYVRY SPVCGENNMT YISACHAGCK 480
  481 KLLVNSEGKK IFYDCSCIPS DDAGNSTSQF KRLTSFDLSN DEVSQNTSVH SQLEALANGQ 540
  541 AMPGACPVNC WTQFVAFLAV MCCLKFVGAS GRASNFLVSV RCVPEKDKTA AMGFGMTLCS 600
  601 MLAFIPSPIF FGWVFDRVCL VWGKTCTNKG NCWLYDPLSM RYTLNFTAAV FIAIGAIFDL 660
  661 GVWYYAKDLK IFDEDVKEVE MKIVQHEEEA NNEKNTEI