YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15011522
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	53	0.79
Transmembrane Helix	54	76	0.73
Non-Cytoplasmic	77	110	0.65
Transmembrane Helix	111	129	0.62
Cytoplasmic	130	142	0.48
Transmembrane Helix	143	165	0.83
Non-Cytoplasmic	166	172	0.41
Transmembrane Helix	173	192	0.55
Cytoplasmic	193	193	0.22
Transmembrane Helix	194	216	0.75
Non-Cytoplasmic	217	226	0.39
Transmembrane Helix	227	260	0.75
Cytoplasmic	261	280	0.45
Transmembrane Helix	281	305	0.86
Non-Cytoplasmic	306	600	0.54
Transmembrane Helix	601	622	0.94
Cytoplasmic	623	638	0.67
Transmembrane Helix	639	660	0.74
Non-Cytoplasmic	661	667	0.64
Transmembrane Helix	668	688	0.88
Cytoplasmic	689	696	0.78
Transmembrane Helix	697	719	0.90
Non-Cytoplasmic	720	741	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGVNQASSS GVDLSSEVRR RTAPLTQEPS RAPDHDAYDA KKSKQEPSSF RSAVASWEPI  60
   61 FAPLFLTALA IFTRMYQIGR SDIVTWDEAH FGKFGSHYLK REFYFDVHPP LGKMLVGLSG 120
  121 FLAGYNGSFE FKSGEKYPED VNYTFMRIFN AAFGAVCVPL AYYTARELGY RKATVWLISL 180
  181 MVLFENSYAT ISRFILLDSM LLCFTFTTTL CWAKFHRLQK ASFSAEWFAW LFLTGVSIGC 240
  241 VCSVKWVGFF CTAIVGLYTV EDLWNKFGDL KMPEVVVAKH LVARIVGLII VPCIVYILSF 300
  301 YVHFWVLENS GPGDAQMSSL FQANLKGTEV GKDSPLEIAL GSRVTLKNMG YGGGLLHSHI 360
  361 QTYPEGSTQQ QVTCYHHKDS NNDWFIYPNR YEPDYDPEDS LRFVGDGDII RLIHGQTGRN 420
  421 LHSHAISAPV TKSQFEVSCY GNITIGDDKD HWAVEVVDDV ASRDRSRIRT LTTAFRLRHP 480
  481 VLGCYLRAGN VNLPQWGFKQ IETTCVKENK PSDVYTHWNV ESHYNERLPP GDPGSYKSPF 540
  541 WKDFIHLNVA MMTSNNALVP DPDKQDDLAS KFWQWPILNV GLRMCSWDDN TIKYYLLGNP 600
  601 FVYWGSTLSL GIFALLVLWY LVRWQRGYTE LTQADIDHIH YSGLYPVIGW VLHYLPFAVM 660
  661 ARVTYVHHYY PALYYAILTF GFCVDWFTQQ MSNKLRWAIY TLLYCAIVGL FAYFRAIVFG 720
  721 IEGPSQQWSH LNWFSGWRIA N