YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: pyr-PB
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFHKFMPNVR TYIILMSFVA AIAWSASAAK NVLTLSKHSE LALHINSHGK VTAENILRTY  60
   61 QYFNMEAVND VFSLDFKITI YSADVDYYLC FHHGRLVGKR NATKECHFKE GIFMGNQNFS 120
  121 SAYNPVLRVG FKGNFKPIGL NDFSKPKVMK KAILFFFPLN EEKFNLHLAE VLSSSTTTTT 180
  181 TTTTTTSTTT TTTTPPPSTT TTTTTTTTTP ASPVAVTKRT RSKSRRPTSI NSNSSNSNIP 240
  241 DKISRHNSNS LKSYNQANSN NNNNNNNNNS SNNNELDLQQ QQVILQRNRK LHRRHRLQQK 300
  301 KRQLQLQQQQ RRRQRQYGTM GVMAQPQPKN LVVRHHHNNA TIMERRRRRR LERQQHKLQR 360
  361 ELWEREQREA GDKERERERV EHLPKATSSA SSSSSSSSTA TSTALTATAA SLAPSAFNLV 420
  421 AIMAASRRKR DRRKRSAGAT GAGAGATGAG ATRGGGSSSS PPDADMQLVE LPSQRLQQQD 480
  481 EQHPQNEYSK PYVNSNLNLD LDLNVNVKQL IDSSSVSVNH AIPALPKNYN YLYSNEHYNL 540
  541 NTKSSTTDSS SLDDSTKFDS PNSHSHSHSA FNQNIDNNLK QLTDRIELAS AESQVETTAN 600
  601 PEGETETVTT ETVMQNRNHI DANNIIDDSY PNDEEHEELI LKKLLRGLRL QQQHQQQQLQ 660
  661 QQQQQPNIEN PNENINVVNN NQNHNDGGLL TNNNHNSNYN EQFANDDETI RIQNNKYETH 720
  721 IVQYKHAVFI WKILGVSRRY DNPIIIAWQF ACHCGKYFVS LYYIDL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle