YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4836362
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRIMEKENI TENLEKISIK NARKVLTESG ANVAQKMDYQ TDKEEQAVDG ASVDPKELAK  60
   61 NEMSAAHKRE QTPFDPSIEP LLKENPRRFV IFPIQYHDIW QMYKKAEASF WTVEEVDLSK 120
  121 DLADWEKLKS GEKHFISHVL AFFAASDGIV NVNLVERFSQ EVQVTEARCF YGFQIAMENV 180
  181 HSEMYSLLID TYIRDSKERE YLFNAIDNLP CVKKKADWAL NWISSKQANF GERVVAFAAV 240
  241 EGIFFSGTFA SIFWLKKRGL MPGLTFSNEL ISRDEGLHTD FACLMFKYLV QKPSQERVIE 300
  301 IIREAVLIEQ EFLTKALPVD LLGMNCELMS QYIEFEADRL LLELGIDKIY NTKNPFSFME 360
  361 FISLEGKTNF FEKKVGEYQK WGVMANRQDN VFTLDADF

Type	Start	End	Confidence
Non-Cytoplasmic	1	233	0.85
Transmembrane Helix	234	255	0.71
Cytoplasmic	256	398	0.64