YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14582255
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIADLLWKS FPLYLFRSGR DSLSESILQT MASSPTKIFC DAGESDLCRD DAAAFLLKFV  60
   61 AIASILLAGA AGVAIPLIGK NRRFLQTEGN LFVAAKAFAA GVILATGFVH MLAGATEALT 120
  121 NPCLPDYPWS KFPFPGFFAM VAALITLLVD FMGTQYYESK QQRNEVAGGG EAAVVEETSS 180
  181 VLPVVVERGN DSKAFGEEDG GGMHIVGIRA HAAHHNHSHS NAHGTCDGHA HGQSHGHVHV 240
  241 HGSHDVENGA RHVVVSQILE LGIVSHSIII GLSLGVSQSP CTIRPLIAAL SFHQFFEGFA 300
  301 LGGCISQAQF KNKSAIIMAC FFALTAPIGI GIGTAVASSF NSHSPGALVT EGILDSLSAG 360
  361 ILTYMALVDL IAADFLSKRM SCNVRLQVVS YVMLFLGAGL MSALAIWA

Type	Start	End	Confidence
Non-Cytoplasmic	1	58	0.88
Transmembrane Helix	59	79	0.91
Cytoplasmic	80	91	0.87
Transmembrane Helix	92	114	0.90
Non-Cytoplasmic	115	133	0.87
Transmembrane Helix	134	154	0.92
Cytoplasmic	155	257	0.95
Transmembrane Helix	258	276	0.65
Non-Cytoplasmic	277	285	0.51
Transmembrane Helix	286	305	0.66
Cytoplasmic	306	314	0.84
Transmembrane Helix	315	337	0.92
Non-Cytoplasmic	338	352	0.81
Transmembrane Helix	353	373	0.85
Cytoplasmic	374	386	0.77
Transmembrane Helix	387	407	0.94
Non-Cytoplasmic	408	408	0.99