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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|14531028
Protein type: Transmembrane
Type Confidence: 0.80
Topology Confidence: 0.44
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMMDTMDTS QSQPMDVAPA VAVAATSGAA LVDFTAAMVS MAATAEAESA ESNNNHIDMA  60
   61 EYKEHRKNKK KKREKREREG KEHRHHKHRD REHREHRRHR DRDRDKERDR EGHHHHPTHH 120
  121 HPNNSQHSTS ASSSPSSAST TPSATIEYVG GSASASPSYL GGGATGTGAA VGATTTYPHN 180
  181 LKIRFLLSGQ RTELSPPTHQ TSATAEVNAP LASSTSASIA VTASATAASA PPATGTTTLG 240
  241 SSISGNAGST SSGNSSGVSA TGGAQSAVGS GGYPKTESSK SSGTASAGSG SGSSSNTSST 300
  301 KHGSNIKDIS SSSNQQASTA SSSSAPSLYV SVPLSTANVP GINLPTSSTS SSTTSESHSA 360
  361 SSRSSGAQSQ HQQQLSNALV GPPMGGSAGA FHGGTTSAGS SSVIQQQSGK SSPALGTLVS 420
  421 GNSGGSIISA SGFPLPSGNL TATTTESGNL KISYEKQTTR VQQLQEQEAP PARRSRTLDL 480
  481 STASASSSSP SAVPATTSPL VVLSNQLPLN SVAASSSTGG LKFTYESQTQ MDVPMMPVSA 540
  541 IKDSPPSSPG SEIGSAMHSA TTAPGSLTGA STAATAQPGN VRKRGRKAKD ATIAAAAAAA 600
  601 AAAAALSNSQ QDLKDVRILQ NGASNTPGNP AGSTPTPPAT PASSNAVSSA SSIITHTAAH 660
  661 MLGNQINPNS SVAQKLSEQL HMEVQDHSIY TPDSMNSQYA GVPFPGKQRN STAVPSNATP 720
  721 AQNPLQSMFS GGGMNGNMPI PQSLEQLLER QWEQGSQFLM EQAQHFDSSL LNCLHQLQSE 780
  781 NLRLEEHVTS LIARRDHLLA VNARLQIPLS TIASNTKAEA HAAISTTAAP TTTTTTSTTT 840
  841 ATSTCTTSVI STIASSGNSS TSTIGLGSST SALNAATTIA AAVSLATTAI NTTIPTMANS 900
  901 RPTVAAASSS GVLDYRGPGA TSNSSNSNSS NNTISNSVSN SSSNPTSSSS ASVPPASSMS 960
  961 ISGMSISNAT NLGMR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle