YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4210332
Protein type:	Globular with Signal Peptide
Type Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLRAVFRRA SIRGSSSASG LGKSLQSSRL VASSQFHSVS ATETLVPRGN HAHSFHHRSC  60
   61 PGCPDCSRTV INGFQGTALQ RWVRPFSSDS GDVVEAVVPH MGESITDGTL AAFLKKPGDR 120
  121 VEADEAIAQI ETDKVTIDIA SPASGVIQEF LVKEGDTVEP GNKVARISTS ADAVSHVAPS 180
  181 EKAPEKPAPK PSPPAEKPKV ESTKVAEKPK APSPPPPSKQ SAKEPQLPPK DRERRVPMTR 240
  241 LRKRVATRLK DSQNTFALLT TFNEVDMTNL MKLRSQYKDA FLEKHGVKLG LMSGFIKAAV 300
  301 SALQHQPVVN AVIDGDDIIY RDYVDISIAV GTSKGLVVPV IRDADKMNFA DIEKTINGLA 360
  361 KKATEGTISI DEMAGGSFTV SNGGVYGSLI STPIINPPQS AILGMHSIVQ RPMVVGGSVV 420
  421 PRPMMYVALT YDHRLIDGRE AVYFLRRIKD VVEDPQRLLL DI

Type	Start	End	Confidence
Signal Peptide	1	27	0.73
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	462	0.98