YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5923861
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	68	0.98
Transmembrane Helix	69	89	0.94
Non-Cytoplasmic	90	156	0.96
Transmembrane Helix	157	177	0.94
Cytoplasmic	178	198	0.85
Transmembrane Helix	199	220	0.87
Non-Cytoplasmic	221	227	0.75
Transmembrane Helix	228	244	0.60
Cytoplasmic	245	255	0.53
Transmembrane Helix	256	279	0.80
Non-Cytoplasmic	280	328	0.64
Transmembrane Helix	329	350	0.90
Cytoplasmic	351	365	0.85
Transmembrane Helix	366	386	0.90
Non-Cytoplasmic	387	439	0.93
Transmembrane Helix	440	459	0.92
Cytoplasmic	460	466	0.74
Transmembrane Helix	467	489	0.86
Non-Cytoplasmic	490	514	0.79
Transmembrane Helix	515	549	0.62
Cytoplasmic	550	759	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNGGGAPSS STHLLDFLEE PIPGVGTYDD FHTIDWVREK CKDRERHRKI NSKKKESAWE  60
   61 FTKNLYDAWS GWLVVTLTGL ASGALAGLID IAADWMNDLK EGVCLSALWF NHEQCCWTSN 120
  121 ETTFAERDKC PQWKSWAELI LGQAEGPGSY IMNYFMYIYW ALSFAFLAVC LVKVFAPYAC 180
  181 GSGIPEIKTI LSGFIIRGYL GKWTLMIKTI TLVLAVASGL SLGKEGPLVH VACCCGNIFS 240
  241 YLFPKYSKNE AKKREVLSAA SAAGVSVAFG APIGGVLFSL EEVSYYFPLK TLWRSFFAAL 300
  301 VAAFVLRSIN PFGNSRLVLF YVEYHTPWYL FELIPFILLG VFGGLWGAFF IKANIAWCRR 360
  361 RKSTRFGRYP VLEVILVAAI TAVVAFPNPY TRKNTSELIK ELFTDCGPLE SSQLCQYRSQ 420
  421 MNGTKAFSDD QPAGPGVYSA MWQLCLALIF KIIMTIFTFG LKVPSGLFIP SMAIGAIAGR 480
  481 IVGIAMEQLA YYHHDWFLFK EWCEVGADCI TPGLYAMVGA AACLGGVTRM TVSLVIIVFE 540
  541 LTGGLEYIVP LMAAVMTSKW VGDAFGREGI YEAHIRLNGY PFLDSKEEFT HTTLAREVMR 600
  601 PRRNDPPLAV LTQDDLTVEE LQGIINETSY NGFPVIVSKE SQRLVGFALR RDITIAIENA 660
  661 RRKQEGIVLN SRVYFTQHAP TLPADSPRPL KLRSILDMSP FTVTDHTPME IVVDIFRKLG 720
  721 LRQCLVTHNG RLLGIITKKD ILRHMAQMAN QDPESIMFN