YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5834394
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	67	0.92
Transmembrane Helix	68	89	0.76
Non-Cytoplasmic	90	94	0.54
Transmembrane Helix	95	115	0.84
Cytoplasmic	116	143	0.60
Transmembrane Helix	144	166	0.90
Non-Cytoplasmic	167	218	0.55
Transmembrane Helix	219	239	0.69
Cytoplasmic	240	260	0.88
Transmembrane Helix	261	284	0.88
Non-Cytoplasmic	285	328	0.87
Transmembrane Helix	329	351	0.73
Cytoplasmic	352	403	0.73
Transmembrane Helix	404	426	0.81
Non-Cytoplasmic	427	430	0.59
Transmembrane Helix	431	449	0.88
Cytoplasmic	450	462	0.72
Transmembrane Helix	463	493	0.76
Non-Cytoplasmic	494	623	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAATAWDPR DQGVYTHCSG KKVKPTVSTL DCTRSWLQDC QRRTFNRKTL HKRLPILGWL  60
   61 PKYNSQDAVG DLVAGITVGL TVIPQALAYA GIAGLPVAYG LYASFVGCFV YIFLGSCKDV 120
  121 PMGPSAIVAL LTYQAAQGSW QKSVLLCLLS GIVELLMGLF GLGFLIDFVS GPVSSGFTSA 180
  181 VSLIILTSQI QSVLGITAKG NTFVEIWTQV FHNIEHTRAG DTVLGLTCIV ILLLMRSLSS 240
  241 CRIGPVDEKE CSSFQRAVNK ILWIVGTARN AILVVVCCIM GYMLHTEEHG APFRVVGEIP 300
  301 PGLPSIQLPP TSLTANETSN GVAEGFVEMV HSMGSGLVVI PLISLMENIA ICKAFANGKP 360
  361 VDASQELIAI GTANIFNSFV QXFPGTGALS RGAVNNASGV RTPLSNIYSG GLVMTALLFL 420
  421 TPYFYFIPRP TLAAIIISAV VFMIEVKVVK PMWRSKKSDL VPGVGTFVAC LVLPLEWGIL 480
  481 IGVGLNVIFI LYHAARPKLT TELLTTQSGV EYLMITPDRC LIFPSVDYVR NLVNKQSIRQ 540
  541 NVPVVIDASH VYGADFTTAT VIDSLISDFN QRGQLLFFYN LKPSICSIFE HVSAAQFVVY 600
  601 YQEQQLDELL KERNYVQKRL ETA