YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4102188
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	35	0.93
Transmembrane Helix	36	56	0.93
Cytoplasmic	57	73	0.84
Transmembrane Helix	74	94	0.87
Non-Cytoplasmic	95	101	0.79
Transmembrane Helix	102	123	0.92
Cytoplasmic	124	133	0.77
Transmembrane Helix	134	152	0.94
Non-Cytoplasmic	153	170	0.83
Transmembrane Helix	171	190	0.93
Cytoplasmic	191	298	0.96
Transmembrane Helix	299	321	0.86
Non-Cytoplasmic	322	343	0.76
Transmembrane Helix	344	366	0.66
Cytoplasmic	367	423	0.87
Transmembrane Helix	424	446	0.87
Non-Cytoplasmic	447	452	0.83
Transmembrane Helix	453	474	0.91
Cytoplasmic	475	535	0.93
Transmembrane Helix	536	557	0.82
Non-Cytoplasmic	558	568	0.77
Transmembrane Helix	569	584	0.46
Cytoplasmic	585	966	0.78
Transmembrane Helix	967	989	0.76
Non-Cytoplasmic	990	1014	0.77
Transmembrane Helix	1015	1039	0.83
Cytoplasmic	1040	1082	0.75
Transmembrane Helix	1083	1105	0.70
Non-Cytoplasmic	1106	1106	0.40
Transmembrane Helix	1107	1130	0.80
Cytoplasmic	1131	1194	0.89
Transmembrane Helix	1195	1217	0.88
Non-Cytoplasmic	1218	1224	0.72
Transmembrane Helix	1225	1245	0.73
Cytoplasmic	1246	1528	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDALCGSGEL GSKFWDSNLS VHTENPDLTP CFQNSLLAWV PCIYLWVALP CYLLYLRHHC  60
   61 RGYIILSHLS KLKMVLGVLL WCVSWADLFY SFHGLVHGRA PAPVFFVTPL VVGVTMLLAT 120
  121 LLIQYERLQG VQSSGVLIIF WFLCVVCAIV PFRSKILLAK AEGEISDPFR FTTFYIHFAL 180
  181 VLSALILACF REKPPFFSAK NVDPNPYPET SAGFLSRLFF WWFTKMAIYG YRHPLEEKDL 240
  241 WSLKEEDRSQ MVVQQLLEAW RKQEKQTARH KASAAPGKNA SGEDEVLLGA RPRPRKPSFL 300
  301 KALLATFGSS FLISACFKLI QDLLSFINPQ LLSILIRFIS NPMAPSWWGF LVAGLDVPVA 360
  361 PWMQSLILQH YYHYIFVTGV KFRTGIMGVI YRKALVITNS VKRASTVGEI VNLMSVDAQR 420
  421 FMDLAPFLNL LWSAPLQIIL AIYFLWQNLG PSVLAGVAFM VLLIPLNGAV AVKMRAFQVK 480
  481 QMKLKDSRIK LMSEILNGIK VLKLYAWEPS FLKQVEGIRQ GELQLLRTAA YLHTTTTFTW 540
  541 MCSPFLVTLI TLWVYVYVDP NNVLDAEKAF VSVSLFNILR LPLNMLPQLI SNLTQASVSL 600
  601 KRIQQFLSQE ELDPQSVERK TISPGYAITI HSGTFTWAQD LPPTLHSLDI QVPKGALVAV 660
  661 VGPVGCGKSS LVSALLGEME KLEGKVHMKG SVAYVPQQAW IQNCTLQENV LFGKALNPKR 720
  721 YQQTLEACAL LADLEMLPGG DQTEIGEKGI NLSGGQRQRV SLARAVYSDA DIFLLDDPLS 780
  781 AVDSHVAKHI FDHVIGPEGV LAGKTRVLVT HGISFLPQTD FIIVLADGQV SEMGPYPALL 840
  841 QRNGSFANFL CNYAPDEDQG HLEDSWTALE GAEDKEALLI EDTLSNHTDL TDNDPVTYVV 900
  901 QKQFMRQLSA LSSDGEGQGR PVPRRHLGPS EKVQVTEAKA DGALTQEEKA AIGTVELSVF 960
  961 WDYAKAVGLC TTLAICLLYV GQSAAAIGAN VWLSAWTNDA MADSRQNNTS LRLGVYAALG1020
 1021 ILQGFLVMLA AMAMAAGGIQ AARVLHQALL HNKIRSPQSF FDTTPSGRIL NCFSKDIYVV1080
 1081 DEVLAPVILM LLNSFFNAIS TLVVIMASTP LFTVVILPLA VLYTLVQRFY AATSRQLKRL1140
 1141 ESVSRSPIYS HFSETVTGAS VIRAYNRSRD FEIISDTKVD ANQRSCYPYI ISNRWLSIGV1200
 1201 EFVGNCVVLF AALFAVIGRS SLNPGLVGLS VSYSLQVTFA LNWMIRMMSD LESNIVAVER1260
 1261 VKEYSKTETE APWVVEGSRP PEGWPPRGEV EFRNYSVRYR PGLDLVLRDL SLHVHGGEKV1320
 1321 GIVGRTGAGK SSMTLCLFRI LEAAKGEIRI DGLNVADIGL HDLRSQLTII PQDPILFSGT1380
 1381 LRMNLDPFGS YSEEDIWWAL ELSHLHTFVS SQPAGLDFQC SEGGENLSVG QRQLVCLARA1440
 1441 LLRKSRILVL DEATAAIDLE TDNLIQATIR TQFDTCTVLT IAHRLNTIMD YTRVLVLDKG1500
 1501 VVAEFDSPAN LIAARGIFYG MARDAGLA