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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|3170547
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAVDAEPVM DGDASFAPPA SPSQRRPGDR AVTVLWSFGK CLGALLPVYL AGYYGFSISV  60
   61 VLFGLVIFMG WKHSRLDKVM RLKSAMYLLE NERTFTTESV FRAKRDLPPW RDHMVIWHHH 120
  121 VSSRVTLCAL QVNFPDVEKV EWVNKIIQQA WPFIGQYLEK LLVETIAPAI RASSIHLQTL 180
  181 SFTKVDIGEK VNILLQNPSK RATPAVKVVG VKAHTEQDRR QVILDLYLSY AGDVEINVEI 240
  241 KKYFCKAGVK GVQLHGKLRV ILEPLIGNIP LVGAVTMFFI RRPKLDINWT GLTNLLDIPG 300
  301 LSAMSDTMIM DAIASQLVLP NRLTVPLVAD LHVAQLRSPL PRGVVRIHLL EAEDLTAKDT 360
  361 VIKGLIDGKS DPYAVLRVGT QIFTSHHIDS NLNPQWREMY EVIVHEVPGQ ELEVEVFDKD 420
  421 PDQDDFLGRS GQFSSLMHTF FCRQWFNLKD VPSGSVHLRL EWLSLLSSAE RLSEVIQKNQ 480
  481 NLTSKTEDPP SAAILAIYLD QAQDLPLASV WPSCLQTCYG TNSPIWSDAF TFFIQDPSKQ 540
  541 DIDIQVKDDD RALSLGTLTI PLMRLLGSPE LTMDQWFQLE NSGSASRIYV KIVLRNTMGS 600
  601 SGLGKPLLTR PQHTSPDPEF ATEGVLRIHL MEAQNLIAKD NFMGGMVKGK SDPYVKIRVA 660
  661 GITYRSHTIK ENLNPTWNEL YEVILTQLPG QEIQFELFDK DIDQDDFLGR CNTSLTDKFF 720
  721 SLFLSLISAI ILLTLLMPPF PHRFKLNLRD IISAQFIDTI LQYQAQQSYQ NKVVPSSAML 780
  781 FVYVERAHGL PVCERSTSPR WDEGFHFLVR DPKEETLTVK VISSIYVLLE PGMVLDRWIN 840
  841 LDGALPESQI LLRVMLKVSV LIDLLPVGKA ALAACSKDGA DPYVSFILLP DKKATTKRRT 900
  901 ATKKRDLNPE FNERFDFDFS LEESYQRRLD LSVKNSVSFM SRERELIGKL QLDLEEIDLK 960
  961 ACVTQW

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle