YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NOXA_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLPTKEEIQ RYWVNEGNKL ILVILYTLGN IAAFVYTFVH YYNSPAFEVV GYGVCFARGC  60
   61 AQLLKLNCAL ILVPVLRNLL SFLRGTFLNN YVPFDKNIVF HKLIAWVICF ATFGHVMAHF 120
  121 NNFRLYQDIT PQEYKRILGI DYPNLTPIKY AFATLAGWTG HVVCIVMVLM YTSAVESIRR 180
  181 PMFEGFWYTH HLFVVFFGLL VVHGLHSILE PTSFWKWVIG PCALYIVERL IRLLRSKKTT 240
  241 MLIQARIHPS RVIEVRMKTE RFKYKPGQYL FLNCPTIAQN EWHPFTITSA PEEDFVSCHI 300
  301 NVVGNWTGKL STLLNPDKKM GIVQENVLKS PDGKPILRID GPFGAASEEV FKYKQVILVG 360
  361 AGIGVTPFAS ILKHIKYQMA RTYNTTPLID KVHFYWICRD RNSFEWFSGL IGELEMENHN 420
  421 NFLEIHPYLT GALSAQEIRD VMYGDEEKDL ITGFTTPTQF GRPKWDEIFA DHALRYAEKD 480
  481 VGVFFCGPKL LSKSLYKAST HYTKTTTCRF HYNKENF

Type	Start	End	Confidence
Cytoplasmic	1	19	0.97
Transmembrane Helix	20	40	0.95
Non-Cytoplasmic	41	60	0.83
Transmembrane Helix	61	80	0.86
Cytoplasmic	81	97	0.87
Transmembrane Helix	98	119	0.91
Non-Cytoplasmic	120	150	0.95
Transmembrane Helix	151	175	0.85
Cytoplasmic	176	185	0.95
Transmembrane Helix	186	206	0.94
Non-Cytoplasmic	207	213	0.80
Transmembrane Helix	214	233	0.67
Cytoplasmic	234	517	0.63