YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4416261
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.81
Transmembrane Helix	21	41	0.94
Non-Cytoplasmic	42	57	0.79
Transmembrane Helix	58	79	0.61
Cytoplasmic	80	97	0.53
Transmembrane Helix	98	120	0.85
Non-Cytoplasmic	121	161	0.63
Transmembrane Helix	162	185	0.87
Cytoplasmic	186	197	0.85
Transmembrane Helix	198	218	0.89
Non-Cytoplasmic	219	227	0.79
Transmembrane Helix	228	251	0.93
Cytoplasmic	252	512	0.99
Transmembrane Helix	513	532	0.80
Non-Cytoplasmic	533	558	0.81
Transmembrane Helix	559	580	0.91
Cytoplasmic	581	599	0.76
Transmembrane Helix	600	620	0.54
Non-Cytoplasmic	621	646	0.44

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLITSTTA ATAASGPLVD YLWMLILGFI IAFVLAFSVG ANDVANSFGT AVGSGVVTLK  60
   61 QACILASIFE TVGSVLLGAK VSETIRKGLI DVEMYNSTQG LLMAGSVSAM FGSAVWQLVA 120
  121 SFLKLPISGT HCIVGATIGF SLVAKGQEGV KWSELIKIVM SWFVSPLLSG IMSGILFFLV 180
  181 RAFILHKADP VPNGLRALPV FYACTVGINL FSIMYTGAPL LGFDKLPLWG TILISVGCAV 240
  241 FCALIVWFFV CPRMKRKIER EIKCSPSESP LMEKKNSLKE DHEETKLSVG DIENKHPVSE 300
  301 VGPATVPLQA VVEERTVSFK LGDLEEAPER ERLPSVDLKE ETSIDSTVNG AVQLPNGNLV 360
  361 QFSQAVSNQI NSSGHYQYHT VHKDSGLYKE LLHKLHLAKV GDCMGDSGDK PLRRNNSYTS 420
  421 YTMAICGMPL DSFRAKEGEQ KGREMEKLTW PNADSKKRIR MDSYTSYCNA VSDLHSASEI 480
  481 DMSVKAEMGL GDRKGSNGSL EEWYDQDKPE VSLLFQFLQI LTACFGSFAH GGNDVSNAIG 540
  541 PLVALYLVYD TGDVSSKVAT PIWLLLYGGV GICVGLWVWG RRVIQTMGKD LTPITPSSGF 600
  601 SIELASALTV VIASNIGLPI STTHCKVGSV VSVGWLRSKK AVDWRL